Detailed information of OS493_029911-T1 in Lophelia pertusa

Genomic Location: scaffold_186:552086...572680
NR annotation: KAJ7325361.1, DNA repair and recombination protein RAD54-like [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
F1Q8K0DNA repair and recombination protein RAD54-like OS=Danio rerio OX=7955 GN=rad54l PE=1 SV=1
Q92698DNA repair and recombination protein RAD54-like OS=Homo sapiens OX=9606 GN=RAD54L PE=1 SV=2
P70270DNA repair and recombination protein RAD54-like OS=Mus musculus OX=10090 GN=Rad54l PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF08658Rad54_NRad54 N terminalFamilyInterproscan
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR050496FamilySNF2/RAD54 Helicase and DNA RepairInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR013967DomainRad54, N-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45629SNF2/RAD54 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007131Biological Processreciprocal meiotic recombinationInterproscan
GO:0015616Molecular FunctionDNA translocase activityInterproscan
GO:0045003Biological Processdouble-strand break repair via synthesis-dependent strand annealingInterproscan
GO:0016817Molecular Functionhydrolase activity, acting on acid anhydridesInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10875RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like proteinEC:5.6.2.-
DNA repair and recombination proteinsko03400deepkoala

Expression pattern
 Expression trend for OS493_029911-T1 global co-expression network
TOP