Gene detail

Detailed information of OS493_029491-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_029491-T1	UBIQUITIN-PROTEIN LIGASE E3A-RELATED	scaffold_180	314631	348528	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_029491-T1

ATGTTCTGTTGGGGTAAAAGCTCAGAAGGCCAGCTAGGTCTGGGGGCAACTGACGACGAACCAGTTTTGTCCCCGAGAAATGTCGAGGACACTTTTGGAAATGTGGCAGAAATAAAAGACATTGTTTGTGGCTGGGATCACACAGCGGTCTTAAAAGAGGACGGTGTTGTTTATACATGTGGAAGTAACGAACATGGCCAGCTTGGGCATCATAAAGAGGCAAAAATACTCGCACGTGTCGATGCACTTGAAACTCGCACTATCAAGCAAGTGGCGTGTGGACAGATGCACACTTTAGCTGTCACAGATAACGGGCTTGTGCTCGCCTGGGGTGACAACACCAAGGGACAACTGGGCCTGGGGAACACTGAAAATAATGTTCAAAGTCATCCAAGAATGGTAAAGAACCTTCAATCTGCTGGTTTGATGGTAACTCAAGTGGCTTGTGGAGCTAGACATTCTCTGGCGCTTACAACAGGTGGATTCTTGTTTTCCTGGGGTGACAATAAGAATGGCCAGCTTGGTATCGGCAACTCAAGCCCAGTCCACTACCTGCCAGAACATGTGTCATCTTTGTTGGGAGTACCCTTTGCCTTGTTATGTGCTGGAGGATATCACAGCTTTGCACTGTCTCTTTCTGGGGCATTGTTCAGCTGGGGAAGAAACAACTTTGGCCAACTTGGAGTCATTGACAACAAAGATCGTTTTATGCCTGAACTGCTCAAGAGTTTAAGATCTCAGAGAGTAAGACATGTAACTGCAGGGGAGTATCATACAGCTATCTTAACAGAGGATGGAGGAGTGTTTACATTTGGCTGCGGTAGTTATGGACAACTTGGACATGACTCTAACAATCACGAGTGTAACCCTAGAAAGGTGGTTGAGTTAATGGGAAAAATTGTGACTCAAGTTGCATGTGGAAGGCTCCACACCTTGGCTTATGTTGCATCATCAGAAAAGCTGTACTCCTTTGGTTCAGGAGATAATGGCCAACTGGGTAACAATCAAGTCATCACTGTCAATAGCCCTGTTGCCGTTGCCAACAGTTGGGTGGCTAATGACGCTATGCGAACTAACTCAGTGGGTCACTGCGTGGTCCACAGGATCGCTACTGGTGGTGACCACTGTTATGTTCTTGCATCAAAAAATGATGATTGGGTTCCCTGTGATCTACGAATGCAAGACTCTTCTAAGCACCTGTGGACTTTGTCAGAGTCCAGTGTCAAGGAATTGGTTCAGCAGTTGTCACTACCCAATCCAGCATTAACAGAGATTGTTCATAAATTAGAGACAGTGTTGTCATCTACAGCTAGTTTGAATGGATCATTTTTGGACAGACAAAACCATGAAAAAACAAGCTCTAGAATTCATGGTGTTCATCTAGCTTCCGCAAGAAGAGCCTTTGGTCTTCTTACTTGTATAAAACACCAGGCAATAGTTAACAAGATATTTGCTGCAATTAAACAAGGAGTCATTCACTCTCTACTTCAGCCTCCTCCTGATATCGAAGCTCTCAGAGTTTATCTACTTATCCCTGAATGCTCTGTCTATCAAAGGGCAGAAGAACACTTTGATACTATTGTCATTCCATTTAGTGAAGCAATCTTGAGATTAACAGCTGATGCTGGCAAGATGTTTCAAGACTGTGTGAAGTATATAATACATTTCCCTGCACCAAAGGTTGCCGATGAGGAGGCCAGAAGACGGCATACAGCCCTTCGTACATGTTTAGATGTTTTAGAGCAGCTTAATGTGGTTAATACAGAGTCTGGTGACATTGTACCATTTAATCAATTCTACATTCCTGAGATACAAGCAACCTTTGATATCAGAGCCGACTACTACAACTGGATTCAAAATGAGCAAAATTTGTCATTCTGTCGCTACCCATTTGTCTACGATGCTGAAGCCAAAACAAGACTGCTCCAAGCAGATGCTGTAATGCAAATGCAAAGTGCTGTGGAAGAAGTGAGTCGCCGCAACGTGCAGTCGATGATGTCTCCGTTGCCGATTAACCAAGTCAATCCAGTACTGTTATTAGTGGTGAAGAGAGAGAGTATTGTTGACAACACCCTTACTCAGATCATGAGATGTGGTCCGTATGACTTGAAAAAACCACTCAAGGTTGTGTTCATGGGCGAGGAGGGAGTAGATGCTGGTGGTGTTAAGAAGGAATTTTTCTTACTGCTTCTGACTGAGATCTTGGACCCAAAATACGGCATGTTTACCTACATTGAAGAGTCTCAGACGATCTGGTTTAACAATCAGACGTTTGAAGAGAGTCCAATGTTCTTGTTGATTGGTGTCATTTGTGGACTGGCTATCTACAACTCCATGATCATTGATCTCAGATTTCCTCCTGTTTTGTACAAGAAACTCTTAGGCAGGAAACCAATTCTTGAAGACTTCAGAGGTTTTAAACCCGTAGTTACAAGAAATCTTGAGTATTTGCTGGAATACAGTGATGAAGAAGACATCACAGAAACGTTTGGACTCAACTTTCAGATTGTCCGCGAGAAATACGGCGCACTGGAATACATTGATTTGATTCCAGACGGAGGGAACACTGCAGTCACACGTGAAAACAGAGAGCAGTATGTGGATGTGTATATAGATTACTACTTGAATAAATCAGTAGAGAAACAGTTTGAGGCGTTTGCTACAGGATTTCACCGTGTGTGTGGTGGTAAAGTTTTGGATTTTTTTCATCCTGAGGAGCTTATGCAGATGGTGGTTGGATGTCAAGATTATGATTTCAGAGAGCTTGAAAAGGCTGCTGAATACAAGGGAGAATATTACAAGCATCACCCTGTTATCAGAAACTTCTGGGAAGTATTCTTTGAATTTACTATGGTCATGAAGAAAAATTCCTTGATCATAATTCAGCCTGTGGTGGGTGGTAAGCGCGGAGATCACCTCCCTGTGGCTCATACTTGCTTTTAA

Transcript

OS493_029491-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00415	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF13540	RCC1_2	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000408	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR000569	Domain	HECT domain	Interproscan
IPR009091	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR051709	Family	Ubiquitin ligases and GTPase regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45622	UBIQUITIN-PROTEIN LIGASE E3A-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_029491-T1 global RNA-seq network