Gene detail

Detailed information of OS493_029462-T1 in Lophelia pertusa

Genomic Location: scaffold_179:696997...709234
NR annotation: KAJ7354902.1, hypothetical protein OS493_029462 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_029462-T1

ATGGAAGCGAATGTAAACAAACTATTTCCAGAGTTGCAGAACTGTTCAGGAGCAAGCAACGCTGAAAAGCGACCCACGAAATCGCGCTCTCGAGTCTGGGAAAAAGTTGTCTGGTTTACAAGAAAGGCGAAAGGAGGAAAAGACAGCAAAACAAGCTCTCCAGAGTTGCATAAGGGCAATATTGGTCGTGCTGCTGGTGACAGCAAAACACTTGATTGCAAGCCAAAAGTACGCAAGACCAGAAGTTTCAAATATCTGAAGCGACGAAAAGTGAGGCAGTTTGGAGGCGACCTGAGCTCAGTAGCGGTCGAAGAAGAAGTTAATGTCCAAGATTGCGGTACAGCAACGGGAACATTTCATGATTTTCAGTCCGAGCGACGAATATCACGCCAAGAAAAAACCGCAAGTAATAACAGCCTGCTAACTGAGATGGCGAAGGGAATGAAACCAGCACAACAAGAGGTGATAAAGGAGAACGTTAAAAGCGTCTTATCTCTACCGATCAACGACTTGTCGTTGAACGAAGGACCAACTTCCGAGAGCTTATCTCCAAGTTTTCCTCGAGTTAGACGAAGTGTGAGTTTCTCCGGGCCAGCCTACAACAGTTGGCCAAGGAAAAAGCGAATATATTTAGAAAATTCCTCGCGTGGTGAACTACTTCTGTCTCCACCATCGAAGCAAAAGTGCGTGACTGGGACGATCAGAAAAAGAGCATCTTTTAGCGGATTCGATTCTTCAAAAATAAATTTGAAGAATTCTTATTTGTCTCTATATAAAGGGGTTAAAAGCACCCCTCATTTACCTCAAGGAGGGAACATCCAAAATCAGAATGGACTAACTATTGGCGCTATACATTTCTATAAAAGCCCAGCTATTTATCAAAAGGATGAGACAACCCTTAAACTTTTACAGAGAAAGAGACAACCAAAACCAACCGATGACGAGTCTTGTGTCGCCAACGCAGGCCTCCTTGGGTCATCTTGTGGGTCTAACTTGGAAAAGGATGGAACGTTATCTCCTTTGTTACCAAGAGAATCAGATGCGATTACTTGTAATGGAATTCCAGAAACAACCGAAAAACTTAACGCAAATGCTAATTCTAACAGTAGTTTAAATAAAGACAGTTGTCAACGTGGCTTGACTTGCACTGAACAGACCGACAACATCAATGTTAGCGACGGTCCAGATAACTGTCTTTCTTTCCACGTCAAAAACATTGACGTGCAAAACTCTACAATCTCAGCTTTTCTGTTGGAGGGAGAGAGTTCTAGTAGCTGCATAACAAATAGTCCAGTAGACTCTCCTGATGAGGACTTAGTCAAGGAGAAGCCATTACTATCATGTAATTCAACTGAAAAAGTGATGCATGTCAGTTCTACAAATGAAAACGTCATCGCAAGAGATAATAATTTTAGTTACACCATGTTAGAGTCAAAGACGCCTATGCATGAAGATGGATCCACGAGGAGTCACAGTAGTGGGTCCGATGAAGCTATGGATATTCCTGAGTGTTACACGTACGCCAATCACACATCACAATCTTCCGCTATTCATCAGGACAAATCGCTCCCTGCAACCGTTTCTGAAGTAATATCAGCTGATAACGAAATCGACAATGCCGTTTTTAGTGCAACACAGTGTAACACACAACATGCCGCAGCACCTTCTTGTAGACTGCCTTCTGTTGACGAAGTTGGCACCTATGGCAACCTACAAACTTTACGGACAAGAAATGAATTGGTGTGGCAGAGAAAGCCGACCGTCAGTGGACCACAGTTTAAAAACCACACCGAGGATATTTTGCAGTGGTTTAGGGAATTTAATGATGAACAGAAGAACATTTTAATCAGAAGACTTCTGGAAGAATGTGAGCTTCCTCAGATGCATATGTTGTCTGTTGCAATGGAGCCTGTACTGCACAAAAGCTGCCCACCAAACTGCCAAGACATGTTGTCCTGGCTGCCGCACCATGTTGCATTGCATGTTTTGTCCTTTCTGGATTCAGTGAGTTTGTGTCACTGTAGTCAAGTTAATCACACATGGAACAACTTAGCTAGTAGTCCATCACTGTGGCAGAATCTATGTGGACGTCCTGACTGGCAGTTGTCTAGGATCGGAGAGGAGAAGGAAAAGAAGAAGTACACTTTGGAAGATGGAACAGTACAGTGGAAGAAGATGTTTGCGTCAAGGTTCCTTTTGCATCAGAACTGGTTAAAAGGAAAATGTGATGTGCGCACATTTGAAGGCCACACCCAAGGCATCTCATGTGTTCAGTTTGACGACACCAGGATCGCAAGCGGCTCATATGACAAGACAATAAGAGTTTGGGATATTCAGAGTGGTGACTGTGATGCCGTGCTGACTCTAGCTGGCCACTCTGGGACAGTCCGTTGTCTGAATCTGAATGGTAACAGACTGGTTAGTGGTTCTGTGGATCGATCCATCAAGGTGTGGGATTTATCATTCAAGTCGTACTGGAGTGGTGCTTCATGTAAGGTGACCATGGTTGGTCATATGCACACAGTTCGATGTCTCCAGGTTGACGACAAGAAGGTGGTCAGTGGATCTTACGATAAAACACTCAAAGTCTGGGACATCAAGACTGGGAATTGCCAGCTAACTCTCAGGGGCCATAATGCTGCTGTCCTGTGTGTTCAGTTTGATGATAGAAAAATTGTCTCAGGATCATATGACAAGACTATTAAGGTGTGGAGCCTGACAGAGGGATCATGTCTAATGACGCTGACAGGGCATCATGATGCTGTTACCTGTTTAAATTTAACCTTTGACAGCAGAAAGGTCATCAGCGGCTCGCTGGATCATAATCTCAAATTTTGGGATCTGTTAAATGGAAAGTGCATTGGTACATTAGACTGGATTAGATCTGAGGGTCACACTGGAGTCATCAGATGCCTTCAGACAGACAGCTGGAGAATAGTGAGTGCTGGAGATGACAAGACACTCAAGATGTGGAGCTTAGAAAGTGGACAGCGTCTGCTGACTCTACGCTGTCACACAGATGGCGTGACATGTCTACAGTTCAATGACTACAGCATCGTGTCAGGATCTTATGACAAAACTGTCAAGTTATGGGACTTTACTCCTTTGCATGAATTTTTGACTCCTGGCTAA

Transcript

OS493_029462-T1

Protein

Uniprot

Uniprot term	Description
D4AM37	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=sconB PE=3 SV=1
D4D8P3	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Trichophyton verrucosum (strain HKI 0517) OX=663202 GN=sconB PE=3 SV=1
C5FP68	Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) OX=554155 GN=sconB PE=3 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051075	Family	SCF complex subunit WD repeat-containing protein	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19872	UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10260	FBXW7, SEL10; F-box and WD-40 domain protein 7	-	Ubiquitin system	ko04121	deepkoala

Expression pattern

Expression trend for OS493_029462-T1 global co-expression network