Gene detail

Detailed information of OS493_029324-T1 in Lophelia pertusa

Genomic Location: scaffold_177:362769...377727
NR annotation: KAJ7377424.1, ATP-binding cassette sub- A member 2 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_029324-T1

ATGGACGAGGCCGACCTGTTGGGAGACCGCATTGCTATCGTTTCAAACGGAAAGCTCCGTTGTGTGGGCTCACCACTCTTCTTAAAAAGTCACTTTGGCGATGGCTACCACCTTACTCTGGTGAAGAAGCGTGACAGAACTCCCCAGGGGTCCATAGTGAATGTTCACTTGTCACCTACAGGATCCAGCCAGGGCCTGGAGACGAGTGAGACGACTCCAAGTGACAACACGCTCCAAGCTGATCATCTGAATAGCGGCGAAGATCAAGTTAAACAAGTGACAAACTTCATCAAATCTCACGTACAAGCCGCCAGACTAGAGCAGAACACACAACAGGAGCTCACGTTCGTTCTCCCTGATAACTCCGTCAAGCGTGGGGGATTTGAAATTTTCTTCAGTGATTTGGAGAAGAGGAAAAGTGAACTGGGGATCGATAGTTTTGGGCTGGCCGATACTGCTCTTGAGGAGGTTTTCCTGAAGGTAACTGACGTTTCATCTCGGGATGAATCCGAAGAGCTCAATGTGTCAAATTCTGAACCCTCTTCAAACCCTGGCGAGTCCACAAGCACTGTGCTCAGCGGCGACCAAGGTGCGGGGCTTGGTGACGAGTGGGATGAAGATATACCGGGAGAAGGAGAAATTGAACTGGGTGACTTGTCAGGAGTTCGTTATGATGTAAGGGAGCAGCTGCTGAGTCCGGAGATCCAAGAAGAAGAGGCCAGTTACCATTATGCTGACCAGACCCCATTGAACACAGCTTTCCAAGGTGTTGGCACTCGTACATTGACTGGTGCATCTCTAAAACTGCAGCAGTTCTACGCACTAGTGGTCAAACGATTCCATCATGCACGCCGAAACTTCAAAGGAGTCATCTCCCAGATTCTTTTACCCGCCATTTTTATCACCATTGCCATGGTAATGGCTCTCTCGTTTCCAAAGCAACCGGACCAACCTCCGCTGGAATTGACTCCATCCATGTTCCCGCGGCCAAACTACATCCCGTTTGCAAACGAGGCTAAGGGATTGAACCGGTTGGCGTCACGACTGGACAAAACCCTGACCCTGCTCTCTGGGGTGGGGGCAACGTGTTGTCTCCGATCAATCAACTTAACAACCACGAACTTCAAACCTTCCAAGAAGCGCCTGGCTCAAATGTTCAACCACTCATGTTCGGTCTCTATAGACGAAGTGTCAGATGAGTATTTCAAACCGTCAAATCTTCACTTGTCGTATATTTATACAAATGGATCTAACGTGACCTATTCAGTGACTCATAAAGACACAGGGAGGGGGTGCCAATGTTCCGCTAACAAGACAGCTTACGTGTGTGTCAGGGGCGCGGCTGGACCACACCCTAAAGAACTGGTCACCATAACGCTGGACACTCTACAGAACATAACCGGGAGGAATATTTCAAAGTACCTGTTGTATACCACAGAGACGTTCAAGCTTCACAGGTACGGAGCGCTATCGTTTGGCGAGGTGGTCAGTTGGGTGCCACAGAAGTTAGACAAAGTTAAAATAACGTCTGTTAGAAGACTGGCTGTTAGAGAAGCTGTTAAGGCGTGGTACAACAACAAAGGCTACCATGCCTTACCGACCTACTTGAACGTCATGAACAATGCCATACTACGAGCCTCTCTGGGAAAAGGCAAGGGAAATCCCTCTGCTTACGGTATAACGGTGTTCAACCATCCCTTCAACAAAACAGACTCTAATCAACTGTCGGCCAGATACATATGGTCCATCACACCCATCATGTACCCAGGAGCGTTCTATTTCAGTGAGGCTAGCTCAGCGTACGTATTTATGATCGTGGTTAACCTGTTTGTTGGAGTCACCGCCACCGTCACTACCTTCATTCTACAGCTCTTCCCGGATGATGTGGTGTTAACCAAGATTTTTAATGCCCTGCGAGTTATCAATCTTGGATTTCCAAACTACTGCTTGGGACACGGTCTCATGGACCTGGCTTACAACCAGTATCTTAAAGAATACTACACGCAGATAGGTATTGTAGCCCGGCATTATCTCACAGATTACTACATACAGATAGGTGAATACGACAAGATTCGGGATCCATTTGAATGGAAGCTTACAACACGTAACCTGGCCTGCATGGCGGTGGAGGGAGTTGTGTTCTTTATTTTAACAGTCTTGATAGAGTTCAGATTCTTTTTTAAACCGAGGCGCACGCATGTGTCCAAGGACCCAGTCGAGGGGCTGGATGAGGATGTAGCAGCTGAAAAAGAAAGGGTTCTTAGCGGAGGCGCCAGCAGGGACCTTATACGAATAGAGAACTTAACAAAGGTGTATTTTTCAAGAAAGAGAGGCAAACATCTGGCTGTGGACAGACTGTGTTTAGGAGTTCCAAAGGGAGAGTGTTTTGGCCTGTTGGGCGTTAACGGAGCAGGAAAAACAAGCACATTTAAAATGTTGACTGGAGACACCTACATGACTGCAGGGAATGCTTTCCTTAACTCCCACAGCATTGTATCGGATGTGCAGAAGGTCCACAAGTGCATGGGTTACTGTCCTCAGTTTGACGCTCTTATTGATGAACTGACTGCCAATGAACAACTGACTCTGTATGCACGACTAAGAGGAGTTCCTGAAAACGAAATACAAAAAGTTGTATCCTGGGCGGTCAAGAAGCTTGCGCTGACACGCTATGCCAACAAACCCAGTAAAACATACAGCGGAGGAAACAAAAGAAAACTTTCCACCGCCATGGCGCTGATTGGTAACCCGCCAATAATATTCTTGGATGAGCCTACCACAGGAATGGACCCGCATGCTCGTCGCTTCCTGTGGAATCTGATTCTGGAGATCATTAACGACGGTCGCTCGGTTATCTTGACGTCACACAGTATGGAGGAATGCGAGGCGTTGTGCACCCGTTTGGCGATCATGGTCAACGGACGATTCAAGTGTCTGGGAAGCTGTCAACACCTGAAAAACAGGTTCGGGGAGGGTTACATAATCACGGTCCGTGTGCAAGGAGACTTACCGAATTTGGAGCCTCTGTACCAGTTCTTCTCGGAAAAGTTTCCACGTGCCACGCTCAAGGAGAATCATCACAACATGGTTCAGTACCAGCTCCCCTCGGGTGTCATGGCGCTGTCGGAGGTGTTTGGTCATATCGAGTCATCTTACGAAGCTTTGAAGGTTGAAGACTATTCCGTCAGTCAGACCACTCTAGATAACGTTTTCATCAACTTCGCCAGTCAACAAACGGACGAAACTGACTATGTCGACAAAGCTCAGTCTTCAGGAAGGACTGGTTCTAGATTCAGAGTGCGCAGACGCGCCGAGAGGTTAAGAGACATATGGTCTGATGAAGTACGCTTCAGTGCTTTGGAAGAAGAGGACGGGGAGCCTGGGCAGAGGATGATGAAGACTGGCAAGTTACCTTCTCTGACCGGGTGA

Transcript

OS493_029324-T1

Protein

Uniprot

Uniprot term	Description
P41234	ATP-binding cassette sub-family A member 2 OS=Mus musculus OX=10090 GN=Abca2 PE=1 SV=4
Q9BZC7	ATP-binding cassette sub-family A member 2 OS=Homo sapiens OX=9606 GN=ABCA2 PE=1 SV=4
Q9ESR9	ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus OX=10116 GN=Abca2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12698	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR013525	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR026082	Family	ABC transporter A	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05642	ABCA2; ATP-binding cassette, subfamily A (ABC1), member 2	-	Transporters	ko02000	deepkoala

Expression pattern

Expression trend for OS493_029324-T1 global co-expression network