Gene detail

Detailed information of OS493_029297-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_029297-T1	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	scaffold_177	154682	164832	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_029297-T1

ATGCCTATCCTGTTAGACAACGTAAAATGCCGAGGTGATGAGTCGACAATTGCCGCTTGTCGCCACAATGGATGGGGTCAGAATGACTGCTACCATTCGGAAGACGCTAGTGTAGTCTGTTGGAGCGAATCAGCGCCTCCTGTTCAAGAACCAACTCTGGCTCCTGGACCACACCCTGATCAAATTGTGAGACTGGCAAACGGAGCTAGGGAAAGTGAGGGGCGCGTGGAAATATTCCATGATGAATCAAACAGTTTTATCCTGGCTTCTGGATCCGGACGGGATTTATTCTATTACATCGCACTTGAAACCAACCTACCGGAGAAGGGAGTACCTCTTGCATTAAGGACGGACAACCCTATGGCAATAACGTTTCATAGCATGGACAAGATGGCATACTGGGCAGAACAGTCTGGATCCATCATTCGTGCTCATCTAAATGGAAGCTCTAGAGAGGTTATACTTACAGGGTTGAACCATCCGTCAGGCATTGCAATAGACTATATCGCCCAAAATCTGTACATTGCAGACCAAAGTGGCATTCAGGTATCAAAGCTCAATGGCTCTTATCAGGCTACTCTGATCGACTTAATGCCTTGCCATGGAATTGCTTTGGACAGCGAAGCAGGTTATATCTACTTTACCTTGAGTGGTGCCAGTCCACGAATATTGCGCGCAGACATGGATGGTAGGAATCCCGTTGTCTTGGTCAATGTGTCCTCCATTAGGGGAACTACTCTCGACATAGCATTGGACAAAAACAAAGGACGACTATACTACTCAGACGAAAGCAACAACCTGATAAAGTATCTCGATCTTGCCAGTTTTATGTCTCATTCCGTGCTGTATGGCAACCCTCACAGACCGGTTGGTCTCACCTTTTACAACGGAACTCTTTACTGGACCGGCATTGGAGCAGCGGAGAAGTTCAGTGGAGCCATATACAAGGCTGATGCTAACAACGTTAATGGTAGCAGCGTTCATGAGGTTGTAGACCTTCTTTCGTACCCCAGAGGATTGTACGCTCACGATTCTCGAGTTAGCAAGCCACCAGCTAATCACCATCCATGCGCAAAAGACAATGGCGGTTGTTCCCACCTTTGTGTAATAAACCCCACGAGCTATAGATGCGTCTGCTTAGGTGGGCCATGTCAGACATCATTCACTTCATCGGTCTCATACTCTACTTCGACGCATGTCATGCTCAGCTCAAAAGAAACTCATAACTCGGTTTCTGTTTCAAGCTCATCTTCCATACGCTCATCTCCGATGCGCTCGGCACACGTCTCGTCTAATCTCGCTTCAGCATTTCTACCCACGTCCTACGTCAGCATGGTCGTTTCCCCGACGATATCAAAAGACAATTCTTCTCCTTCGCCACTGGCTCCAACCATGACATTCGTCGCAAATTCCATGTCTACTGCTACTCCTCCTGTAACTGATTACTGCTCCGAACATGATCCTTGCAAGAACGGTGGCAGCTGCCAAGTTGATGGTCTCAGCTACAAATGCGTGTGCATAGAATATTTCAGTGGCCAGCACTGTTCAATAGACATAAGTAGCGGAGTAGTTGCAATGGTAATAAACATACGGAGAAATCAGTTAAATAATTCAGAATTGATACTCATCATTGTCAAACTCTTGAACAACCTCTGCGAAGATGAAAGCGACAGATGTCCAATACCACTCTCAGAAGGCGCAAGAAGAAAACGAGAAATCAGTAAGGTTACTTTCAAACCCGAAGACGTCATAGTAATGGAACCAAAGGAAGTCGGCGAAAACCTTCTAGTGGAGCTGGCCATTGTTAAAATTATGCTGGATGGTTCGTCTATTGTTATCTCCAGTGAAAACCTTACTCAAATAATACAGGCGTCTGCTGTAGAAATCGGCCAGAGACTCGGAGGAACGATAATAAGCATCATGCCAAAAATCACTGCACCAACAACTCATACACAGCCCAGCAGTGATAAAACAACAATGGTAACACAAACAACGCCAGGAGAAGACACAACAGTATCTGGTACAACTAACCAGGCACCAATTGGACCAGGAGAAGTAGCTGCCAGCAAGGGAGGTAGTAATGGTGGAGTTATTGGTGGCGTGGTTGTGGCTGTGCTTGTTATTATTGTTATGGCTATAGCCTTGGCGGTCTGGTATTTCAGGGTAAAAATTCCTGGTCTTCCTTTTTCTTACAAAAGAAGCACGGATGTACCTGGCCCACGTGTTGCAGCGTTTGAGAATCCAGGATATGACAATGCCTCGGGCTTTGGAACAGCTGATGATGGTCTCTACAACGACCTACCGCCACCAGTTGTTCTCTCTCCGTATGAAGATCTGAACGAATTTGGTGCTGCCTGCAACCCGATCTATTCTGACATTGGCCTGGAAAAACTTACGTTTCTAGATGTTGACCTTGCAGGTTCGGTAGGACTGAGATCTGATGTCGGTGCAAATATGTTTGGCAGTCATCCAAAGGTGAACACCAACCAGATAGACATAAATGTCCAAGGTGATAAGGAGATTGATGACAAGGAAACTGGAATGGTGTCAGAAGCTGGTGTTCGTAAGGAACAAGAAAATAAAGGCCAAACTGTACTTGTTTTAGAAAACGGTGAAAGATTTGGCACGGTGTCTGAAATGTAA

Transcript

OS493_029297-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001190	Domain	SRCR domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_029297-T1 global RNA-seq network