Gene detail

Detailed information of OS493_028736-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_028736-T1	ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5	scaffold_168	374781	394670	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_028736-T1

ATGCAAATGGCGCTTCGCAAGTTGTATGGTTTGATTTTCGTGTTGTCTTGTTGCCTGCCATCTTCCCAGGCAAAATGCAGAGGAAGAACTATTTTAACCGGTTTACAAGGAACTGTACACGATGGACCGGGTAAATATCCGAAGAACACATCGTGCGAATGGCTCATTAAAGGTCCATACCCCAATGTTTCTATAACATTGGAATTTATAGAATTTAACACAGAATGTTCGTTTGACTTCCTGTTCATCCATGACGGTGACTCATACCTTTCTCCTCTTATCGCAAGTATCAGTGGCGGCAACTCACTGCACACAGTTGTTGCACATTCAGGACAGATGCTAATCAATCTTTATAGTGACGTCAACTACACCCTCGAGGGTTTCCTTGCTAACTACACAATAGAGAACTGTACCAAAGGCTGTTCTGGTCATGGGACGTGTAAGGATGGCTTCTGCCAGTGTAATAAAATGTGGCGCGGCAAAGCATGTGACGTGGAGTCATGCCTGACAAACTGTCTTGTGGCGGAAGGACATGGCCTCTGTGATTATGCCAAGGCCAAGGACCATTGTGTGTGTAACCATGGCTACATTGGCGAGGCCTGTACTCTTTCTACGCTTACTGATATCCACTCCAATAAGTGGTTTGACATTTCATCAACATCTTCAGTTTTTAGCCCCAGGATAGCACATTCTGTTGTTTACATTGAGCAAAGTGATACTTTACTTGCATTTGGAGGTTATTCTTTAAATAAAGTGTTTGACGACTTGTTACAGTTTAATTTTACCACAAGTCTGTGGAGTGAGGTTCAAGTTAGATCACCTAAACCTGTTGGGCGCTTTTCTCACTCTGCCAGCCTTTATCTTGATTGCATGGTTCTGTTTGGAGGTGAATTGCAAAATGGGAACCTTGCCAATGATCTGTGGTTTTATAACACAACTCGCAATAAATGGACAGAGCTCGCTGTCATTGATGTCGTCAAACCGCCTCCTCTTGCTGAACACACCGCGACTGTGGTGGATGACAAGCTTTATGTTTTTGGTGGTCGTACCAACAGTGACCCATTTTCTTCAGCCATGTACTCGTATTCTTTATCAAATCAAACTGGTTGGACAAAGGTTTTATATAACCAAGGGAATGAACTGCATTTGCGCATGTTGGGACACACAGCAGTTTATTATGCGGATATGCGATCTCTTGTTGTGTTTGGTGGATTTGTACCACAAAAAGCCAGGAGCAGTGATCGCTCAAACAAACTCTTTGCATTCCATGTTGATCTTCATGTTTGGTCTGAAATAGCTGCTGCAGGAGATATTCCGAGAGGTCGTGCATTTCACTCGGCAGTGATGGTCGGGGACTATATAATAATTTATGGTGGAAATGTCCATAAACATGATGAGGAAAATAGTTGTTACGAAAATAAGCTCTTATTCTACCACCTGAAATGCCACAAGTGGATTTCTGCGCCAACGTTTGATGCCCTTTCTCCTTCTGCTGGCAATCCACGACAAGGAAGATTCTCCCACCAAGCTGTGCAGCGGAATGGAACAGTCATGCTAGTGGTCGGCGGGTTCAGTGGGTTGCCACTCGGTGACGTTTTAGGTTTTAAATTGCCTATTGCCATAGCAAAAAAGAGTGGACACTGCGAAGGTTACAGTACCCAGACAAGCTGTAAAAGAGACCCAGAATGCGGGTGGTGTAACACGTTAACCAAGTGTCTCAGCCTGAATCAATCAGGTAGTTGTGTTGAAAGTCTATCAAGAGACTCCTGCCCCGGACCATGTGCCGCTTATTCGCAATGTAGCGCTTGTCTGTTGTTCGGAAGCACAAAATGTGGCTGGTGTGTTCAGGATGGTAGATGTTACTCCAAAGAGTCACCGACAGGTGCCTGTCAAAGCATTACCGATAGCAACAAGAAGAAGCTTAGAGGCTGGTGGGGCACCTCAGGACAATTTTTGACATCGTCAAATGAATGTCAAACCATTAACTTTCCTCCGGGGATTACAGTCATTGAGAATATCCAGTATCCAAACAGTTCCCTTCCTGATGGCGTTAGGATTGTCTCAATGTCAGAGGTCACAATTTTACGTGTGGAGGAATCAGTAGATCGTGTAGATCGTGTGCGCATAACTCAACTTATTGGCTTTGTATATCCCTTCAAAAACCAGTCCGCACCATGGATGTCTTACGAATTGTCCCTTATGCTTGATAATGCGAGATTCAGTGAGGCTAAATTGTGGCTTAGTACTGATGAAACTGAGGCGAACCATCCTTTAGCACCACAGTTCCTCCAACCTTATGCCAGTTCAGATTGTTCTGTGTATAAGACTTGTCTTGCCTGCATGACCGATGCATCTTGTGGATGGTGTGTGACGTCTTGTATGTCACGCAATGCTCCAGCTGGATCATGTCAGGACAGTGTTGGAAATCCGAGAGATATGACTTTGAATAGGACAGAGTGCACATTATGTTCAGACCATGTGGATTGCCACTCTTGTGACCAGGGTGGTGACTGTGTATGGGGCAAAGCCGCCAATGATCTTGGCTGTTATCGCAGAGGACGGATCGTTGTGAAAGACGTGATTCAGAATTGCAGTAGCCCTTGCTTGAGTCGCAAAACTTGTAGCAGTTGTTTAAGTGACAAAGTTGGCTGTGCCTGGTGTGACAAGACACAGAGCTGTTTTGTGTTTGGAACGTACACGTCACGTTATCCATTTGGGCAGTGTCCTCATTGGATTGACAGTCATTCAGGGGGACAATGCCCCGATTGTAGTCGACACACAACTTGTAAAGGTTGCTTGGCGGGCATCAGATGTGGCTGGTGTGGAAATGACTATGACCCACGCATCGGAAGATGTTATGCAGGGGATTTTAACTCACCTTACAGTGGACAGTGTTCAAATATATTCCCAACAAATGGAAGCACTGAATGGTCGTACAGTGAGTGTCCAGATATAGACGAGTGCAAGTTAGGCCTGGCTCAGTGTCATCATAATGCATCCTGTATGAACATACCTGACTCATTCAACTGCATCTGTAACAGAGGGTTTACTGGAGATGGTACTCTAGCTTGTAACAAAACATGTTATCACGACTGTGGTATCCATGGCATTTGTGGCGCCGACTTCAAGTGTGATTGTAACCTTGGGTGGTTGGGTGAAAACTGCACCGTTGATTGCGGATGTAACGGGCACAGTGACTGTTCACATGGCATCGGTATTTGTGACAAGTGTCAAGATCATACTCAGGGTGCACATTGTGAGTTCTGCGTTCCTGGATCTTTTGGTAACGCAACCATTGCTGACGGGTGTAAACCTTGTCAGTGTAATGGTCACGGTGATCCAGGCCAGCACTTGTGTGACATGGCTACAGGAAAGTGCTTCTGTACGGATAACACCATGGGGTACAACTGTGACAAGTGTATGCCAGGGCTCAAGGGAAATGCAAAGAATGGCGGCTTGTGTTTCCACGAATGTGATACCCGTAGCATCCTTACTAACGTCACTCAAGGTTTCATTTCAACGCAGTTGGGTGGAGGAGTTGCGAACAAGGCAAAAGCCAGTTGTCTGTGGCTGATCTCGTCATTGAGTAACAGCAGTCATGGTGTAGTTTACGGCCCGTCCCCTCCCCCGGTGGAGAACAGGGGGCAAATAACTCTCACATTTAAGGAAATCCACATCAACTGCTTCACAGACCATGTAGAGGTGTATGATGGCTTACCGCCATTCTTACTGGACGGTTCATCAACGGTCCAGTCGTTTTACAAGCTTGGCTCCTTCTGTGGCTGGAATAAAACTATGAAATCCATAACAGCCTTGTTAGGGAACATGGTGGTTCTCGTCAAAGCTGATTTGAGCTCTGGTGCATTGTCAAAAGTTTCAGTGCTAAGTTCAACGTCAAAAATGCCCAGATCTCTGTGA

Transcript

OS493_028736-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00053	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF00431	CUB	CUB domain	Domain	Interproscan
PF01437	PSI	Plexin repeat	Family	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF13854	Kelch_5	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000859	Domain	CUB domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002049	Domain	Laminin-type EGF domain	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR016201	Domain	PSI domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR024731	Domain	EGF domain	Interproscan
IPR035914	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46093	ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_028736-T1 global RNA-seq network