Detailed information of OS493_028560-T1 in Lophelia pertusa

Genomic Location: scaffold_166:66702...78662
NR annotation: KAJ7370949.1, X-ray repair cross-complementing protein 6 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P12956X-ray repair cross-complementing protein 6 OS=Homo sapiens OX=9606 GN=XRCC6 PE=1 SV=2
P23475X-ray repair cross-complementing protein 6 OS=Mus musculus OX=10090 GN=Xrcc6 PE=1 SV=5
O93257X-ray repair cross-complementing protein 5 OS=Gallus gallus OX=9031 GN=XRCC6 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03730Ku_CKu70/Ku80 C-terminal armFamilyInterproscan
PF03731Ku_NKu70/Ku80 N-terminal alpha/beta domainDomainInterproscan
PF02037SAPSAP domainDomainInterproscan
PF02735KuKu70/Ku80 beta-barrel domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005160DomainKu70/Ku80 C-terminal armInterproscan
IPR005161DomainKu70/Ku80, N-terminal alpha/betaInterproscan
IPR036361Homologous_superfamilySAP domain superfamilyInterproscan
IPR016194Homologous_superfamilySPOC-like, C-terminal domain superfamilyInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR003034DomainSAP domainInterproscan
IPR006164DomainKu70/Ku80 beta-barrel domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12604KU AUTOANTIGEN DNA HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joiningInterproscan
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0042162Molecular Functiontelomeric DNA bindingInterproscan
GO:0043564Cellular ComponentKu70:Ku80 complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10884XRCC6, KU70, G22P1; ATP-dependent DNA helicase 2 subunit 1-DNA repair and recombination proteinsko03400deepkoala

Expression pattern
 Expression trend for OS493_028560-T1 global co-expression network
TOP