Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
Genomic Location: scaffold_165:24056...66916
NR annotation: KAJ7377501.1, Hemicentin-1 [Desmophyllum pertusum]
| CDS | |
| OS493_028484-T1 | |
| Transcript |
| OS493_028484-T1 |
| Protein |
| OS493_028484-T1 |
| Uniprot term | Description |
|---|---|
| A6H584 | Collagen alpha-5(VI) chain OS=Mus musculus OX=10090 GN=Col6a5 PE=1 SV=4 |
| Q99715 | Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12A1 PE=1 SV=2 |
| Q60847 | Collagen alpha-1(XII) chain OS=Mus musculus OX=10090 GN=Col12a1 PE=2 SV=3 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00092 | VWA | von Willebrand factor type A domain | Domain | Interproscan |
| PF13927 | Ig_3 | Immunoglobulin domain | Domain | Interproscan |
| PF07679 | I-set | Immunoglobulin I-set domain | Domain | Interproscan |
| PF00090 | TSP_1 | Thrombospondin type 1 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013783 | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR002035 | Domain | von Willebrand factor, type A | Interproscan |
| IPR036383 | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR036465 | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR036179 | Homologous_superfamily | Immunoglobulin-like domain superfamily | Interproscan |
| IPR007110 | Domain | Immunoglobulin-like domain | Interproscan |
| IPR003599 | Domain | Immunoglobulin subtype | Interproscan |
| IPR000884 | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR003598 | Domain | Immunoglobulin subtype 2 | Interproscan |
| IPR013098 | Domain | Immunoglobulin I-set | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10075 | BASIGIN RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005886 | Cellular Component | plasma membrane | Interproscan |
| GO:0007156 | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| GO:0007411 | Biological Process | axon guidance | Interproscan |
| GO:0030424 | Cellular Component | axon | Interproscan |
| GO:0070593 | Biological Process | dendrite self-avoidance | Interproscan |
| GO:0098632 | Molecular Function | cell-cell adhesion mediator activity | Interproscan |
| Expression trend for OS493_028484-T1 global co-expression network |