Detailed information of OS493_028397-T1 in Lophelia pertusa

Genomic Location: scaffold_163:717051...718145
NR annotation: KAJ7389931.1, DNA excision repair protein ERCC-8 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5BIM8DNA excision repair protein ERCC-8 OS=Bos taurus OX=9913 GN=ERCC8 PE=2 SV=1
Q8CFD5DNA excision repair protein ERCC-8 OS=Mus musculus OX=10090 GN=Ercc8 PE=1 SV=2
Q13216DNA excision repair protein ERCC-8 OS=Homo sapiens OX=9606 GN=ERCC8 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR042238FamilyDNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1Interproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46202DNA EXCISION REPAIR PROTEIN ERCC-8Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000109Cellular Componentnucleotide-excision repair complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0006283Biological Processtranscription-coupled nucleotide-excision repairInterproscan
GO:0031464Cellular ComponentCul4A-RING E3 ubiquitin ligase complexInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10570ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8-DNA repair and recombination proteinsko03400deepkoala

Expression pattern
 Expression trend for OS493_028397-T1 global co-expression network
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