Gene detail

Detailed information of OS493_028194-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_028194-T1	VACUOLAR PROTEIN SORTING 54	scaffold_160	349122	365464	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_028194-T1

ATGCTACGATTAGTGGATCCAAATGAGGCAAAACCATGGCAGAGCTGTGCAATTTGTAGCGACAAGATATTTTTCAGAACTCCAAGAGAGTTCAGCTCTCATTTGAGACAAGCGCATTGTACGAAAGAGGGAGGGTCGTTTGTTTGTCGTTATGGCAAAAATGGCGTTTGCCCTTCTTTACCTGTTGAAGGTGTCAGCGACAAAGATTACGAGGCTCATGTGAAGAAAAATCACACTAAACACGAAGAGATAAAAGCAGAGTTTAACGCCACTGTTACTACTGATGAAACGCTGTACCCAAGACCACGATTACCGCCCATCTCATTTCCTAATGCAAATGCATTCACAGTCTACTCTTCTACGCAAAACCTTCCTGCCATCCTAAATGACCCAAGATTACTCAAACGACAGACAGACTTCTTCACCAAGGCATGGGGTGAGGACTTCGTGCCACAAGAGGTTCCGCCACTCACACTGCTTCCTAGAATTCCAACAATCTACTTTGACGACTACCTCAAGAAAACAGAGTTTAGAATTAAAGTTCATCACAAACTTAAGAGGCAGTTGATTGTCGCAAGCACGACAGCCACTCCTGGTGACACTGGTTTTACTGCAGCTGCAATTGCCGCTGCCAAAAGACAGAGTGTTGACAAAGTTGCTTCAGATATCAGCTTGATACCAAAGGTGTTTATGATGCCCAACTTTGCCCTGGAAGATCCTGAGATATTTAACCATGTTCTTCCTTGGAGTATGGTTACACAGGAAACAACAACTGAGGGAGTAAAAGGCATGCAGAGGAACTCAGCAAAGCTTCTTCAGGAAAAGCTATCACATTACCTGGACATCACAGAAGTGAACTTGGCTCATCAGATCTCGCTACGATCAGAGGACTTCTTCAGTGCAATGGCATCCCAAGATCAGCTGCAGGATCATGTTGGAGAGACAGTCAGTGAGATCAAACACTTGAGAATGAAAGTACAGAAGGTACAAGAGGTTTTGTGCTCAGGATTCCTGGATGTTCTCAGGCTTTCATCTTTACGGTCACGATACCTCAGTGTATATGAAAAGTTGAAACTGATGGCCACAGTTCATCAAACACAGCCCACAATTCAGCTGTTATTATCAACGTCTGACTTTGTTGGTGCACTGGATCTGATCAGCACCACACAGGAAGTTTTACAACAAGAACTGGCTGGCATTCAGAGCTTCAGACACTTAGGCTCACAGCTAGCAGAACTTGAACGAGTCATTGAGCGAATGATGGAAGCAGATTTTGTGGAGTTTGCTACAGCTAATCTTGGCAGGATGGCTGAAGATGAGATGGGAAATGAAGACCTAGTTGATGAGGATAGGCTTGTGTCAGTGTTGTTTGGTCTCCTTCGGAAGCACAAGTTTCACTTCTTACACTTGTATCGTGATGAGGCTTATTCTACAATAAAGAGCACAATCAGACAGACGGTGCAAGATATTGTTACAGACAGTAGTGAGAATGAAGAAGAAAGTCAAAGTCTAGCTGATGCTCTGAGAAGTTTGGATTTCCTACAGTGGATGGGCATGCTAGAGAAAGTGTTCAGCGCATCGCTGAATGTACTGAGAAGGATGCAGGTGATGCACCAGAGCATTGTGCGTGTATTGGTGATAGCAGTAGGCGGTGTTAAGTCTCACTCCGATCCTGATGATCTGGACAGCATAGACATACCTGAATCTGATTCTGATTTCCTTAAACCAGTCTGCAGTGGAATGGACATTTTGATAACCACAACTGATTATCGTAAACTGACGCAGGAGAGTAAAGAGCTTCTTTGTGCAGCTTGTGAAATGGCACAGCTACGGTGTGCCAAACTTATCAATGTCAGAGGAAAGGCTGGTTACCTGGACAGCTTATCGTCATCAGAGTTTGTCCGGCTGACACGTATGGTTGAAGACTTTGTTATGGACTGCGAGAGGATTTGTGGAAGACAAAGCCACAGCCTAAGAGCCACTCTCTTGTCACAAGCTAAGAAATTTGTGGAAAGGTTCCATGAAGAACGCAAAAATAAATTAAGTTTGATATTAGATAATGAAAGATGGAAGCAGGCTGATGTTCCCACAGAGCTGCAGTCCTTAGTAGATTCTTTAGTTGATGGTGTTTACCCACGGGGAAAGGAGTCCAAATTTTCCATAGGTCCCACAGTCACTAGTGAACAGAAGCCATCGCCAGATTTACTTGTAAATGGACAAAGATTTTCTGTTGTTGGGACAGTACTGTTATTAGTGAATATGTTAGTGGAATACTGTCAGTGTGTGGATGATACTCCTATGCTCGTCACAGACATCATGAATAAACTATTTGAGACTCTTAAGATGTTCAACTCAAGGACTTGTCAGTTGGTTCTTGGAGCAGGCGCTCTTCAGCTTGTTGGACTAAAGACAATCACTGCAAAACATCTAGCTCTTGCCGCCCGATGTTTAGAAGTGGTTACAATTCACATTCCTGTTTTCAAAGCACATTTCGAGCAAAGGCTCCCTCCTAAACAATACGTACTGTTGTCGCAGTTTGATCAGATACTCAAGGATTACAACAATCACCGCCAGGAACTGTTTAGTAAAATCGTGAACCTCATGGAAGAGCTATTCAAAAATATTTTCTCAAAGTGGGAAGTGAAAGCTCCAATGCCGTCCCAAGCCATGCGCAGTGCTGTCAAGCAAATCACAAAACTTCACGAGTCCTTGTCACTTGTTTTACCTGAAACTCAAGTCGAGTCCATATTCCGGGACATCAAAAGAGCTTTCAAGCAAAGTCTGGCGCACAAATTGGACAAGTTAGGAATGACGAATGATGGCGGTCCGCAACACGGACTTGTGACATCAGATCTAGCGTTCTTCAAGGAAAGCCTGAAGAATCTCAGTGGACTGGGGGACATTGGCAGAAGCCTGGATGACCTGTGGAGAACAGTGAACGAGCTCAAAATCAACAGAGGGTCACCATCCACGGGACGGAAAAATATCCTGCAAAGATAG

Transcript

OS493_028194-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07928	Vps54	Vps54-like protein	Family	Interproscan
PF10475	Vps54_N	Vacuolar-sorting protein 54, of GARP complex	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012501	Domain	Vacuolar protein sorting-associated protein 54, C-terminal	Interproscan
IPR019515	Domain	Vacuolar protein sorting-associated protein 54, N-terminal	Interproscan
IPR039745	Family	Vacuolar protein sorting-associated protein 54	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12965	VACUOLAR PROTEIN SORTING 54	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000938	Cellular Component	GARP complex	Interproscan
GO:0006896	Biological Process	Golgi to vacuole transport	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_028194-T1 global RNA-seq network