Gene detail

Detailed information of OS493_028148-T1 in Lophelia pertusa

Genomic Location: scaffold_159:439170...446659
NR annotation: KAJ7377589.1, High mobility group [Desmophyllum pertusum]

Gene Structure

Sequence

Gene family

Gene family	Subfamily
Transcription Factors Family	HMGA

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02178	AT_hook	AT hook motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017956	Conserved_site	AT hook, DNA-binding motif	Interproscan
IPR000116	Family	High mobility group protein HMGA	Interproscan
IPR000637	Conserved_site	HMG-I/HMG-Y, DNA-binding, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23341	HIGH MOBILITY GROUP PROTEINS HMG-A AND C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000785	Cellular Component	chromatin	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09283	HMGA2; high mobility group AT-hook protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Expression pattern