Detailed information of OS493_027906-T1 in Lophelia pertusa

Genomic Location: scaffold_155:567885...588192
NR annotation: KAJ7355117.1, hypothetical protein OS493_027906 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P68907E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus OX=10116 GN=Pdzrn3 PE=1 SV=1
Q69ZS0E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus OX=10090 GN=Pdzrn3 PE=1 SV=3
Q9UPQ7E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens OX=9606 GN=PDZRN3 PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595PDZPDZ domainDomainInterproscan
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR003613DomainU-box domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001478DomainPDZ domainInterproscan
IPR051971FamilyE3 ubiquitin-protein ligase PDZ domain-containing proteinInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15545PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15682PDZRN3_4, LNX3_4; ligand of Numb protein X 3/4EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Expression pattern
 Expression trend for OS493_027906-T1 global co-expression network
TOP