Gene detail

Detailed information of OS493_027542-T1 in Lophelia pertusa

Genomic Location: scaffold_151:60349...64143
NR annotation: KAJ7390018.1, hypothetical protein OS493_027542 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q9Y7Y3	Uncharacterized RNA-binding protein C365.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC365.04c PE=4 SV=1
Q07623	Nucleolar protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NOP6 PE=1 SV=1
Q6Z1C0	Nucleolin 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0192900 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR034228	Domain	Nop6, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0042274	Biological Process	ribosomal small subunit biogenesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14789	NOP6; nucleolar protein 6	-	Ribosome biogenesis	ko03009	deepkoala

Expression pattern