Detailed information of OS493_027390-T1 in Lophelia pertusa

Genomic Location: scaffold_149:209619...267069
NR annotation: KAJ7355995.1, TNF receptor-associated factor 4 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q28DL4TNF receptor-associated factor 6 OS=Xenopus tropicalis OX=8364 GN=traf6 PE=2 SV=1
Q3ZCC3TNF receptor-associated factor 6 OS=Bos taurus OX=9913 GN=TRAF6 PE=2 SV=1
Q6DJN2TNF receptor-associated factor 6-B OS=Xenopus laevis OX=8355 GN=traf6-b PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21363TRAF3_RINGTNF receptor-associated factor 2/3/5, RING domainDomainInterproscan
PF02176zf-TRAFTRAF-type zinc fingerFamilyInterproscan
PF00169PHPH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR049440DomainTNF receptor-associated factor 3/5, RING domainInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001293DomainZinc finger, TRAF-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10131TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0033209Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan

Expression pattern
 Expression trend for OS493_027390-T1 global co-expression network
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