Gene detail

Detailed information of OS493_027384-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_027384-T1	TNF RECEPTOR ASSOCIATED FACTOR	scaffold_149	58433	73515	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_027384-T1

ATGGAAGAAGGAGGATTAGCAGTCTTCCGACTCGAATTCGAAGATGAACCCAGATTTGGTGGGCATGATTTTGTGTTTGTTGACGAGTTGTCTGCAGGCCAAAAGTGCTCCATTTGTCTTGTTGCCATGCGGAACCCCGTGCAGACTATGTGTGGTCATCGCTTCTGCGAGAGCTGCTTGTTAGGGACATTCAGGCAAGGCCATGCTCAAGTTTGTCCACAGGATAGGAATCCTATTCCTGAAGATGGTGGGTTCTTTCGTGATGTAGCCTGGGAGAGGGATATACTTTCTCTACGCGTCAAATGTAAGAAGAGTGAAAGAGGGTGCGATTGGACTGGGCAACTACGTCACTACGAGGAGCACTTTGCCTTATGCGAATATGAAGACGTGGCTTGTGCTGCCTGTGATGAAGAGATGCAGAGAAGGCTCCAACAAACACACACAGCATCAGAATGTCGCAACAGGATCGTGCAATGTGAATACTGTGACAAGGCGTACCAGTTCTGGCTGACAGAGACTCATAAAGGTGGCGAATGCACACGTTTTCCTCTTGACTGTCCTCAAGAATGTGGAGTGCAGGAGATACCTCGAGAGGAGGTGGAGTCCCATGTGAGGGACGATTGTATGATGACGATGGTGGTCTGTCCTTACGAGGGAACTGGATGTACCTTCCATGATAAAAGGAGTGATTTGAAAGCCCATCTTGAGGTCTCGAGTGAAGAGCACCTGAACAAAACGTGGTCTATGCTGTTAAAGACAACAGAGAGATTAAATGAGCTGGAGGCAGTAGAAGGTCAAATAGGAGAATTGCAAACCAATGCAGAATCCACGAAAAGGTCTTTGGACAGGAAGAGCGAAGAAATTAGCGACCTGAGGCTGTCGGAGAAAAAGCTTGAAGTGGAAAATATGAAATTGAAGAAAGACGTGACAGAACTGCAAAAACAGCTTAAAGAAGTAAAACATACCGCTGCTAATGACCAGAAGGAGATCAGTTCACTGAAACAACTTGTACAAACCATACAGATCAGGGTAGAGGCTACGGAGGTAAAGCAACCACTAATAAATCCAACTCGTTATGCCGAGGCGCCCATAGCCAAGTCTGGTGTTGTGAAGGGAGCGATAACATTTGATGATACGATAAAAGCGAGGCGGATGGTTTTTTGCCAAGGATGTGGAACGCAAGTGGTAGAACATGGAAAGTATCGCCACAACTGTGGGGTAGAATCCCAAAATGGTGTGTCGCTCCAAGGTGATGTAAATAAGCAATCACTTTTGTCATTTGATGACTTCAAAAAGAGGAAAGAGGTGGATAGAAGATCCAAGTTTAAAAAGCCAAGTGACAAAAGGCAAAACCAGAAAAAGTCAACAAAGGTGGAGGCAGTTAAGGTGCAAGTTGGCCTTGTATCAGGTAATGGTAATGCAGGCCATTTGAAGAAAGTGAAAGGAAGAACAATCCCTGTCCTTGTAAACACGAATGTGGATGCTGCCACTCTTCTCACAACAGCCGTAGAGAAGCATGCCAGGCATTTCAGACAATTTAACAAATTCCTGGACTATGTAGTGCTTTATTCTGATATGTCTGTGGTGAATTTCTTACCTGGTAGCAGCACCCCATTTACTCTTGAGAGGTACAAGTCAGACTTGTTAAAACCTTATTCAAAGTTGAATTTTTGGCTGTGCGTGAAGGAAGAATTCGAGAGTACCAACTATGGCAGCAGTGAAAGCGATGATGCTGACCTTGACAATCCCTCATACCAAGTTGGCTTTGGTTCCACATCAGCTGCTCCTGGTCTGTCCTCAACTTCGCGATCATCAACTAACGTAACGGCAACATCGACTAGATTTTCATCGGTATCTACCATCTCCTCACCATCTATGTCAACATCTGGTACATTTACAAGATGTTCCTCATCAGCCACCATCTCATCGCCATCCATCACTTACCATCAGTGCCCAACCTGCTATGGTGTTTTCTCTCAGGGAGAAATTGAGTCCCATGCTGATGCCTGCGCTGATGCGTGGGTGGACCCAATAGGGGATCCAGATGGTGTAGTTGAAACACAGAATGATGAGGACGAGAAGCAGTGTAATGAAGATGCTACAGATACCCCAAGAGAGTCATCAGCAGTTAATTTGGAAACCCTTAAAAACGAAGTTTCCAATTTAAGAAGTGCATGTGGGTGTGAATTGACAAACAGAGTGTCAATACGGCGCCGTTCAATCTTTCAAGACTACATGGATGCGAGGAAGAAGAAATGGTTCAAGCCAAAAAGCTTAATTAAAGTTACCTTTGTTGGGGAACCCGCTATAGATGATGGTGGTCCCAAACGTGAATTTTTCACAGAAATTTTTGGTCATATAAGACACACGCTCTTCAATGATGATGGTGTGCCATACGCGGATATGAGGGCTCTCGCAAATGACGAGTTTAAGGTGATAGGGGAACTAATGGCCAGTTCCCTTATACAGGGAGGTCCAGCGCCTAGTTTTTTGGCCACCAGTGTATATGACTACATTGTTGGTGGGGTGTCAAGTTTGGAAACTGATACGTGGGCTCCTCTTGTCTCGGAAGATTCCCTGAGGCAGTCCATTGAAAGGATAGCTGCTTGTAATACTGCTGAAGAGCTTAGAGCACTCCTCATAGATGATTCTATGATGGATATCCTACAGATGGTAGGGTATCGTGGGGTACCATCCAAGGAGACCTTGAAGTCTGTTCCAGAAATAACAAGGTCAATTGTGATCACTGGAATCGCCAGGACACTGGCTACAATTGATCAAATTAGCACTGGCCTTGCCTCCATTGGAGCCTTAGACTATATCAGAAGTCACAAAAATGCCATGCAGCCATTGTTTACCTCAGAAGGAGCAAAACATTTTCAGCCAACACCTGACGTTTTCCTTGACGGCCTGAATGTTGAGTACAGTGCAGAGGGAAGCAATAGGAAAAATGCTGAAATAGATGTGTACAAACATTTCTGTGACTTTGTACAGGACCAAGGAATGGAAGAAGGAATGGAAGAAGGTGGACTTGTAAAACTCTACAAATTTATCACTGGCAGTGATAGTTTCACACCACTTGGACTGGAGAGGGTTATCACTGTGCGGTTTATTCACTGGTGTGTGAGTGACTGCAAATGCAGGCCTACAGCTTCTACTTGCGATCCAAGTATAAATCTGCCAGTCCATTACAGCAGCATGTCATCCTTCGAGGAAGCAATGACTTCTGCCATGAAAGAGGGCTTTGGTCTTGGTCTAATCTAG

Transcript

OS493_027384-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF02176	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569	Domain	HECT domain	Interproscan
IPR001293	Domain	Zinc finger, TRAF-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0033209	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_027384-T1 global RNA-seq network