Detailed information of OS493_027328-T1 in Lophelia pertusa

Genomic Location: scaffold_148:323771...328031
NR annotation: KAJ7371214.1, RING-box protein 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8QG64E3 ubiquitin-protein ligase RBX1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2
P62877E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1
P62878E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12678zf-rbx1RING-H2 zinc finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR024766DomainZinc finger, RING-H2-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR051031FamilyRING-box E3 Ubiquitin LigaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11210RING BOXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0031461Cellular Componentcullin-RING ubiquitin ligase complexInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0097602Molecular Functioncullin family protein bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03868RBX1, ROC1; E3 ubiquitin-protein ligase RBX1EC:2.3.2.32
DNA repair and recombination proteinsko03400deepkoala

Expression pattern
 Expression trend for OS493_027328-T1 global co-expression network
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