| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| OS493_027281-T1 | WD40 REPEAT PROTEIN | scaffold_147 | 612309 | 662856 | - |
| CDS | |||||
| OS493_027281-T1 | |||||
| Transcript |
| OS493_027281-T1 |
| Protein |
| OS493_027281-T1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF04003 | Utp12 | Dip2/Utp12 Family | Family | Interproscan |
| PF12894 | ANAPC4_WD40 | Anaphase-promoting complex subunit 4 WD40 domain | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR007148 | Domain | Small-subunit processome, Utp12 | Interproscan |
| IPR011047 | Homologous_superfamily | Quinoprotein alcohol dehydrogenase-like superfamily | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR020472 | Repeat | G-protein beta WD-40 repeat | Interproscan |
| IPR024977 | Domain | Anaphase-promoting complex subunit 4-like, WD40 domain | Interproscan |
| IPR027145 | Family | Periodic tryptophan protein 2 | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19858 | WD40 REPEAT PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000028 | Biological Process | ribosomal small subunit assembly | Interproscan |
| GO:0000462 | Biological Process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0032040 | Cellular Component | small-subunit processome | Interproscan |
| GO:0034388 | Cellular Component | Pwp2p-containing subcomplex of 90S preribosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for OS493_027281-T1 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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