Gene detail

Detailed information of OS493_027281-T1 in Lophelia pertusa

Genomic Location: scaffold_147:612309...662856
NR annotation: KAJ7377719.1, U3 snoRNP protein [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_027281-T1

ATGTATAGAGGCAATGTTCCTCACCAACAACAGTCTGCATCAGTATTACAACAGGGAGGCAAATTTCAGACTTCAAATACAAGAAAGATTCCTCCTGAAAGCAGTTATTCAGTTTTAACTGGAACATCTGTGCCACTTAGAGATACGAGTGAGAGACATTCTTCAGCGGCAAGCAGTGATGCACATTTTAGTGCATATTCCCCACTCAATGCACTGGATAAAGCACCCTCCTTTACTTCTCTTCTGGAGCAGTCTGCTATTAATCAAGGGAATCTAGAAACAACATACACTGGATCTATACCTAACTTGGATTTGCTTGGAGAACTTTTAGTGGAGGTGGCTAGTGGTGGAAATATCCACCAAATAGCAGTAGAGGACATTGTGGGCAACAGATCATGGACTCTACCTTTTGAAAATCACAAGAACATATCAAGAATTTGTTTGTCTCCAGATGGAAGGATAATCATTACAGTTGATGATGATGGAAGGTGCCTCGTAGCTAATTTGAAGACCAAGACTGTTCTTCATCATTTCAATTTCAAAAAGCCTGTTTTTGATCTAACTTATAGTCCATGTGGAAGGTTTATAGCAGTGACTCATGGAAAACACATCAAGGTTTGGCATGCCCCTGACCACAGTAAAGAGTTTGCTCCCTTTTCTGTTCATAGAACTTATACAGGTCTCTATGATGACACTGTTTGTATTGACTGGTCCTCAGACTCCAGATTTCTTGCCGTGGGAAGCAGGGACATGACAGCTTGCATATTTTCATTATTCCCAGTTAAGAACTTTACTCCAGTCACCTTGTCTGGTCACCGAAACACTGTGAGAGGCTGTTATTTTGAAGAAAACTCATTGAATGTATATACTGCGAGTAGTGATGGTGCGCTATTTTGCTGGACGTGTAGCATACAGCTTGAGGATGCGCAACTTGCTGATCAAACAGATTCCAAACAAGAACGTGAAAATTCCATTCAGTGGAAAAAGCAATCCAAGCACTACTACAACCAAGATGGCTCTGCTGAACTGACGACTACTGCATTCCACAAATCATCACACCTTCTAATTGCTGGATTTTCCACTGGTGTGTTTACACTACATGAAGTACCAGACTTTATTCTCATTCACACTTTAAGCATATCACAACAGACTATTAAGACCGTGGCTGTTAATCCCAGTGGAGAATGGCTTGCATTTGGGTGCAGTAATATGGGACAGTTGTTGGTGTGGGAATGGCAAAGTGAAACATACATACTCAAACAGCAAGGTCACTATTACGACATGAACACCTTGTGTTACTCTCAAGATGGACACTATATTGCAACTGGTGGTGACGATGGCAAGGTTAAGCTGTGGAACATGATGTCAGGTTTCTGTTTTGTAACATTCAATGAACACAGATGTGCTGTTACAGGGGTTGTATTTACACCAAACAGTAAAGTAGTGTTATCCTGTTCTTTGGATGGCACTGTTAGAGCATTTGATCTTAACAGGTACAGGAATTTCCGTACTTTTACCTCACCACGAGCAGTGCAGTTCTCATGTTTGAGTGTCGACAGTAGTGGGGAAGTGGTTTGTGCTGGTTCACTTGATACATTTGAGGTTTTCGTATGGTGTATGAAAACTGGACGACTTATTGAGGTACTTACAGGCCACGAGGGACCTATTTCTGAGCTGGTGTTTAGCTCGTCTCAGCCACTTTTGGTATCAGGATCCTGGGACAAAACCGTCAGGCTGTGGAACATGTTTGGTAGCAAGTTGTCATGGGAAACCCTAAATTTGGCATCTGATGTGTTGACAGTGTCTGTGCGTCCTGATGGTGGCCAAGTAGCAGTGGCAACACTGGATGGTCAAATCACTTTCTTTGATGTAAGAACAGGCATTCAAGTTGGATCAGTGGAAGGACGTAGGGACCTTGCTGCTGGAAGGAGGACTTCAGATAAGATTACAGCCAAGACCATGGCCACTGCAAAATGTTTTACCAGCCTGTGTTACACTGCTGATGGTAAATGTATACTGGCAGGTGGCCGATCAAAGCTTGTTTGTATATATCATGTTGATCAGCAGATGTTGTTAAAACAATTTGAAATTTCCAGCAACCTCTCTTTAGATGGCATGAAGGAATTTCTCCATAGTGGTAACATGACAGAAGCAGGACCAAAGGACCTTATTGATGATAATGATGATGATAATGATCAATCTCTTTCTCTACCCGGTGTATTAAAAGGTGATATGAGTTCACGCAGAACCCGGCCAGAAGTTAGAGTGAATTCACTGCAGTTTTCGCCTACAGGCCAGTCATGGTCTGCGGCGAGTACTGAAGGGCTAGTAGTATATTCTCTGGAATCTGATATTGTATTTGACCCATTTCAACTGGACTGTGATGTCACTCCGGAGAAGATCCGACAAGCTAGTAGGAACAAAGAACACACTAAAGCACTGGTATTGAGCCTCAGAATGAATGAGCAAGAACTGGTGTTTGAAGTTATGGAGGCAGTTCAACACGGTGATATTCCTTTGGTGATTCAGTCCCTGAAGGAGCCATATATAGAACGATTGTTGCACTTCATTGGGTTGCAGTTGGAGACGTCACGCCATCTTCAGTTTTACCTTTTGTGGTGCCATCAACTATTAACTGTACATGGACAAAAGCTGAAAATACTGGCCAGTAGACTGTCAGTTGTGTTGCGTAGTTTACAAAAGAGTGTTACAAGACAACAACAAGACCTGGACAAGGTTTGTTTGAGTAACACCTATGCCCTCACCTACCTCTTAGCTTTTGCTGATATTCCAAGCCCACAGTAG

Transcript

OS493_027281-T1

Protein

Uniprot

Uniprot term	Description
Q15269	Periodic tryptophan protein 2 homolog OS=Homo sapiens OX=9606 GN=PWP2 PE=1 SV=2
Q5RFQ3	Periodic tryptophan protein 2 homolog OS=Pongo abelii OX=9601 GN=PWP2 PE=2 SV=1
Q8BU03	Periodic tryptophan protein 2 homolog OS=Mus musculus OX=10090 GN=Pwp2 PE=1 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04003	Utp12	Dip2/Utp12 Family	Family	Interproscan
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR007148	Domain	Small-subunit processome, Utp12	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR027145	Family	Periodic tryptophan protein 2	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19858	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034388	Cellular Component	Pwp2p-containing subcomplex of 90S preribosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14558	PWP2, UTP1; periodic tryptophan protein 2	-	Ribosome biogenesis	ko03009	deepkoala

Expression pattern

Expression trend for OS493_027281-T1 global co-expression network