Detailed information of OS493_026953-T1 in Lophelia pertusa

Genomic Location: scaffold_142:722425...747661
NR annotation: KAJ7371309.1, hypothetical protein OS493_026953 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q1HE26Mothers against decapentaplegic homolog 4 OS=Bos taurus OX=9913 GN=SMAD4 PE=2 SV=1
P97471Mothers against decapentaplegic homolog 4 OS=Mus musculus OX=10090 GN=Smad4 PE=1 SV=2
Q13485Mothers against decapentaplegic homolog 4 OS=Homo sapiens OX=9606 GN=SMAD4 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628PHDPHD-fingerDomainInterproscan
PF13771zf-HC5HC2HPHD-like zinc-binding domainDomainInterproscan
PF03165MH1MH1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR003619DomainMAD homology 1, Dwarfin-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR034732DomainExtended PHD (ePHD) domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013019DomainMAD homology, MH1Interproscan
IPR013790FamilyDwarfinInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR036578Homologous_superfamilySMAD MH1 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13703SMADInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007179Biological Processtransforming growth factor beta receptor signaling pathwayInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0030509Biological ProcessBMP signaling pathwayInterproscan
GO:0060395Biological ProcessSMAD protein signal transductionInterproscan
GO:0070411Molecular FunctionI-SMAD bindingInterproscan
GO:0071144Cellular Componentheteromeric SMAD protein complexInterproscan

Expression pattern
 Expression trend for OS493_026953-T1 global co-expression network
TOP