Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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Genomic Location: scaffold_140:800035...803250
NR annotation: KAJ7383649.1, Activator of basal transcription 1 [Desmophyllum pertusum]
| CDS | |
| OS493_026835-T1 | |
| Transcript |
| OS493_026835-T1 |
| Protein |
| OS493_026835-T1 |
| Uniprot term | Description |
|---|---|
| O74362 | Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=esf2 PE=1 SV=1 |
| Q4KLM5 | Activator of basal transcription 1 OS=Rattus norvegicus OX=10116 GN=Abt1 PE=1 SV=1 |
| Q4HZ47 | Pre-rRNA-processing protein ESF2 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=ESF2 PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR034353 | Domain | ABT1/ESF2, RNA recognition motif | Interproscan |
| IPR039119 | Family | ABT1/Esf2 | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12311 | ACTIVATOR OF BASAL TRANSCRIPTION 1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000447 | Biological Process | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0000472 | Biological Process | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0000480 | Biological Process | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005730 | Cellular Component | nucleolus | Interproscan |
| GO:0034462 | Biological Process | small-subunit processome assembly | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K14785 | ESF2, ABT1; ESF2/ABP1 family protein | - | Ribosome biogenesis | ko03009 | deepkoala |
| Expression trend for OS493_026835-T1 global co-expression network |