Gene detail

Detailed information of OS493_026789-T1 in Lophelia pertusa

Genomic Location: scaffold_140:330413...359915
NR annotation: KAJ7383604.1, Ubiquitin carboxyl-terminal hydrolase 47 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_026789-T1

ATGGTCAATGCAACGTCCAAAGAGGTAGTCCCTGTAGAAAATGATTGCCATACCGACGAACCGACAGTTTTGTGTATCGTAAAAGACGCGACCACTGTCGACTGGAAAAACAGCAGGCATACGGTCAATCTACCGGCATCTACTCTAGTGAAAGAACTGTACTGTCATGTTGCTAAACAGGTCAACTATGTAGAAGACACTTTCGATTTAGTGTGGAGTAAAAGCCTGGAAGACGGCACCGAAGAGATTGTACTAAATGGCGAAAAGACAAAAACATTACAAGAAATCGGGCTGGCGGCCAACGGCAAAAAGAACAATTTCTTAATCAAAGATAAAGATGGAGTGCAACCAAAGAAAGCAAAGGATGAAACAGATGAAACGATTACGGAAAGTGTCTCTAACCTGTTTCAGAGTAATACCAGCAGTTCGTATTATTCCTCCAGTGACGGCTACACCTTGGGAAAGTCAGAAACAGGATTTGTTGGTCTTGTGAACCAGGCCATGACATGCTATCTGAACAGCCTCCTACAGACACTGTTCATGACCCCAGAGTTTAGGAATGCTATTTACAGGTGGGATTTCACTGGAAGTGAAGAGGAAGCATCCAAGAGTATTCCTTATCAGCTTCAGAAGCTGTTTCTTCATTTACAGACAAGTTCCAAGAGAGCTGTAGAGACCACTGATGTTACCAAGAGCTTTGGATGGGACAGTAGTGAAGCATGGCAACAGCATGACGTACAGGAGCTCTGTAGAGTCATGTTTGATGCTTTGGAAAGCAAGTTCAAAAAGACTGATCAGGATGATATCATCAACCAACTGTATCAAGGAAAACTCAAGGACTATGTGAAATGCCAACAGTGTGGTCATGAAAGTGCACGGACAGACACTTATCTAGACATCCCTCTGGCAATCAGGCCTTTTGGATCAAAGCATGGATTAGGCAGTGTGGAAAATGCCTTGGAGGATTTTGTCACTCCAGAACTCCTGGAAGGTACAAATCAGTATTTCTGCGAGAAATGCGACAAAAAATGTGATGCACACAAGGGGTTGAAATTCTTTACCTTCCCTTATCTTTTAACCTTTCAACTGAAGCGGTTTGCATTTGACCATGCAACACTTCATAGAGTCAAACTGAATGACAGGATGACATTCCCAAAATATCTCGACCTGAAAGACATTGTAAGCAAGGAATTGGAAGAGAATGGTGCCAATGAAGATGCCAGTCTGAAAGGGGATTCCCCAAGCAGCACAGAGACTGACAGTGGGGTAAGTGAAGGCTGTTCTGATAACGGCATGTCCACTGGAGATGAAGACATGGACAATGCAAATACAGGAATCAATAGAGTGGACGGGACCACTGGAATGAAGAAAGTGGAGCTGACTGAAGACTTGTTAAACAGTGGCCTGGCACAGAACATGAAGGGTCCATATTGGTACGAGTTGTTCTCAATAATGATTCACTCAGGCAGTGCATCAGGAGGACATTATTATGCTTACATCAAATCCTTTACAAATGGGCAGTGGTATTGTTTTAATGACCAGAGCGTGTCAAGGGTATACGATGATGATATTGAGCGTACTTATGGAGGACTTGAATCATCCAGAAGCTACTATTCATCAGTATATTCAAGCTCCACAAATGCATACATGCTGATGTACAGACAGGTTTCTCCTGAGAGAAATGCTAAGTTCTTGGATCAATGTGATGTACCTACCCACATAGTGGATCTAATGTACAAACTGCGACACCAGGAAGAAATGGAAAGAAGGAGAAAAGAAATGGACAGAAGCTTGTGCAAGATCAAGATTTTTTGTGAGCACCCCGTCAGCAAGAGAATGATGGAACGCAAATTGGAGATTCATAAGGATGACACATTGAAAGCAGCAATATCCATTGCTCATAAGCTGTTCCACTTGGAGAAGGTTTTAACAGCTGAACAGTGCAGAATTGTCAAGTATGATGACTATTATGACTACATTGAGAGATCATTTGATGGTGAAGAGCAAAATTCGATGAGCAAAGTGCTCTGTGGTGTTAAACAGTCTTACATATTCGACCTTCTCCTTGAAACAAGAATGCCACATGAAAGATTTTTACCCTACAAACCCGGAGGAACAACAGTCAAAGTTCACATTGTAGATCTGGAAAATGAGAGAGTCGCTTCATATGTAAATGTGCGACCATTGCTCAGTTCAACTGTTAAGGATCTTCACACTCTAATTCATGAGAAATTCAAACTTCCTCTGGATTGTATGAGAATTGTGTTTGAAGGAGCATACAATGATCTTAAGCTGCTGGACAGCCCTAACAAAGTATTAAAAGAACTTGGATTCTTCAAAAACAACAGGGTTTTTGTGGAAGCCTCTAACAGGGAGGCAGAGTTTCTATTTAAAGACTCAAGAATGTTTAAAATCTTAGATGTGTATCAGCATACTATCCAGCTGTGCGTCATGTTGCCAGATCCATCCAGAAAACCATCAGAGCACACAAGTAGGTATATCTGCGAGGCGGCAGTTGATTCTGAAAAGACTGAAAAACAAAGAGAAAAAATTGTTCCTGTCGACAAGAGAATCACCCTTGGAAAGCTGAAGGAAATTCTCAAGAGTGATGTAGGATGTTTGCCAGAATTTTTTAGGGTTTACAGAGTTTACTCAAACAACCAAGAAATTGAGTACAGCAAGTTAACTGACCCACTGACAAGCTTCAATGATGATTCTAAGGTGCGAGTGAAGTACAGTCGTGCTCTCAAGAAAGGTGAACATCAACTGAAAATATTCCTGCTGAAACCCATCGAAAAGGAGCCTTTTAAGTACTTTTGTGACTGGATTGTCACTGATGGCATGACAGTAAAGCAGTGCAAAGAGCTCTTGCAGCCAGAAATCTGTCAAAGATGTGGTATTGATGTCCCAGTTGAAAATCTGAGGATGCGAAGAAAAAACTGGAAAAATCCTGGCACAGTCTATGTTGACAGTCAGGTTTTTGAAGAGAACATTCAAGTGTATGCAAGCTTTGAAGTGTTTTTGGAAATACTAGAAGGTCCCGAGAGAATGACCTCAACAGATCAGCTGTCAATCTATGTACGACATTGGCATCCTTCAACAATAACTCTGGACCTTCCAAAAGAAGTTGTTTTGCAGGATAGTGTGGTTGAAGAGTTGAAAGATGAAATAAGTAAACTTAGTAGCATTCCAGTGGAGAATTTAGAGTTGTGCAAGGGTCGTGGACAGTTTCCCTGTGAAGTGCCAATTCTGGAGATTCATGATGAGTATGACTGGTCAAGTGATATGACATCCCTCGGAGCAAGTCCTTTGCTAGTTAATGATGATGGAGCAGTGTTATTTTACAGAGATAAAACAGAAAAACTCATGGAAATAACGGAAGAAAAGAAAAAGGAAATCATGAAAAAGGAAAATGCCAAGACCAACAGCTCAAGCATGAGGACTGGCAGATTTTCATACAAAGAAAAAGCTCTAAAAATTTATACAGATGATGATAGACCAAGCAAATGA

Transcript

OS493_026789-T1

Protein

Uniprot

Uniprot term	Description
E1C1R4	Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus OX=9031 GN=USP47 PE=3 SV=1
Q96K76	Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens OX=9606 GN=USP47 PE=1 SV=3
Q5U252	Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus laevis OX=8355 GN=usp47 PE=2 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF19718	USP47_C	Ubiquitin carboxyl-terminal hydrolase 47 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR045578	Domain	Ubiquitin carboxyl-terminal hydrolase 47, C-terminal	Interproscan
IPR050164	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11857	USP47; ubiquitin carboxyl-terminal hydrolase 47	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Expression pattern

Expression trend for OS493_026789-T1 global co-expression network