Detailed information of OS493_026705-T1 in Lophelia pertusa

Genomic Location: scaffold_139:535222...544690
NR annotation: KAJ7390195.1, E3 ubiquitin-protein ligase rbbp6 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7Z6E9E3 ubiquitin-protein ligase RBBP6 OS=Homo sapiens OX=9606 GN=RBBP6 PE=1 SV=1
P97868E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus OX=10090 GN=Rbbp6 PE=1 SV=5
O94264Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP8B7.15c PE=4 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyULD|UFD|DWNN

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13696zf-CCHC_2Zinc knuckleDomainInterproscan
PF08783DWNNDWNN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR025829DomainZinc knuckle CX2CX3GHX4CInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR014891DomainDWNN domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15439RETINOBLASTOMA-BINDING PROTEIN 6Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

Expression pattern
 Expression trend for OS493_026705-T1 global co-expression network
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