Detailed information of OS493_026640-T1 in Lophelia pertusa

Genomic Location: scaffold_138:846770...871984
NR annotation: KAJ7327761.1, La ribonucleoprotein domain member 1B [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q659C4La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2
Q6ZQ58La-related protein 1 OS=Mus musculus OX=10090 GN=Larp1 PE=1 SV=3
Q6PKG0La-related protein 1 OS=Homo sapiens OX=9606 GN=LARP1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05383LaLa domainDomainInterproscan
PF21071LARP1_HEATLARP1 HEAT repeat regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006630DomainLa-type HTH domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR006607RepeatLARP1-like, DM15 repeatInterproscan
IPR045180FamilyLa domain containing proteinInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22792LUPUS LA PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000339Molecular FunctionRNA cap bindingInterproscan
GO:0048255Biological ProcessmRNA stabilizationInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0010494Cellular Componentcytoplasmic stress granuleInterproscan
GO:0045727Biological Processpositive regulation of translationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18757LARP1; la-related protein 1-Messenger RNA biogenesisko03019deepkoala

Expression pattern
 Expression trend for OS493_026640-T1 global co-expression network
TOP