Detailed information of OS493_026554-T1 in Lophelia pertusa

Genomic Location: scaffold_137:931350...951184
NR annotation: KAJ7356170.1, Lysine-specific demethylase 4B [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8VCD7Lysine-specific demethylase 4C OS=Mus musculus OX=10090 GN=Kdm4c PE=1 SV=1
O75164Lysine-specific demethylase 4A OS=Homo sapiens OX=9606 GN=KDM4A PE=1 SV=2
Q8BW72Lysine-specific demethylase 4A OS=Mus musculus OX=10090 GN=Kdm4a PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13831PHD_2PHD-fingerFamilyInterproscan
PF18104Tudor_2Jumonji domain-containing protein 2A Tudor domainDomainInterproscan
PF02373JmjCJmjC domain, hydroxylaseDomainInterproscan
PF13832zf-HC5HC2H_2PHD-zinc-finger like domainDomainInterproscan
PF02375JmjNjmjN domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002999DomainTudor domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR040477DomainLysine-specific demethylase 4-like, Tudor domainInterproscan
IPR003347DomainJmjC domainInterproscan
IPR034732DomainExtended PHD (ePHD) domainInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR003349DomainJmjN domainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10694LYSINE-SPECIFIC DEMETHYLASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000785Cellular ComponentchromatinInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0010468Biological Processregulation of gene expressionInterproscan
GO:0032452Molecular Functionhistone demethylase activityInterproscan
GO:0032454Molecular Functionhistone H3K9 demethylase activityInterproscan

Expression pattern
 Expression trend for OS493_026554-T1 global co-expression network
TOP