Detailed information of OS493_026193-T1 in Lophelia pertusa

Genomic Location: scaffold_133:876400...899100
NR annotation: KAJ7390317.1, U2 snRNP-associated SURP domain-containing protein [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5R7X2U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii OX=9601 GN=U2SURP PE=2 SV=1
O15042U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens OX=9606 GN=U2SURP PE=1 SV=2
Q6NV83U2 snRNP-associated SURP motif-containing protein OS=Mus musculus OX=10090 GN=U2surp PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08312cwf21cwf21 domainDomainInterproscan
PF01805SurpSurp moduleFamilyInterproscan
PF04818CIDCID domainRepeatInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000061DomainSWAP/SurpInterproscan
IPR013170DomainmRNA splicing factor Cwf21 domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR006569DomainCID domainInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035967Homologous_superfamilySWAP/Surp superfamilyInterproscan
IPR008942Homologous_superfamilyENTH/VHSInterproscan
IPR051485FamilySR-related and CTD-associated factorInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR047488DomainU2-associated protein SR140, cwf21 domainInterproscan
IPR035009DomainSR140, RNA recognition motifInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23140RNA PROCESSING PROTEIN LD23810PInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12842SR140; U2-associated protein SR140-Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_026193-T1 global co-expression network
TOP