Detailed information of OS493_026088-T1 in Lophelia pertusa

Genomic Location: scaffold_132:505017...509178
NR annotation: KAJ7327809.1, Homeobox protein six2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9I8H0Homeobox protein six1 OS=Xenopus laevis OX=8355 GN=six1 PE=2 SV=1
Q62232Homeobox protein SIX2 OS=Mus musculus OX=10090 GN=Six2 PE=1 SV=2
Q6NZ04Homeobox protein six1b OS=Danio rerio OX=7955 GN=six1b PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16878SIX1_SDTranscriptional regulator, SIX1, N-terminal SD domainDomainInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356DomainHomeobox domainInterproscan
IPR031701DomainHomeobox protein SIX1, N-terminal SD domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10390HOMEOBOX PROTEIN SIXInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

Expression pattern
 Expression trend for OS493_026088-T1 global co-expression network
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