Gene detail

Detailed information of OS493_025674-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_025674-T1	PROPERDIN	scaffold_127	1132995	1151540	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_025674-T1

ATGCAGGAATGGAACAACCGCGATTGGAATCACGTCGCACTCAAATGGGATAACAACACCGGCAGTTTGAGGATTTACCTTAACTGCACAATAGTCAAAGTTGTAAACAAAAGCGCAAAGGCTGAGCCTCTGGAAGACGATAAAGCATCGCGGCTAATATTAGGAGCAAGTCACGCCAAAAAGAAAAACATGAAATTGATGGTGGACGAATTTGCTATTTGGAATAGCACGCTGTCAGACGACACGCTGTGCAAGGTGTTCAGAATTCGGTCAGTGAATGGAAACTACAGTGATTGGTCAGAATTCGGCCCGTGTTCAGTGTCCTGTGGTAATGGCACGATGACACGCACAAGAAACTGTACCAGTCCCTCGCCGAAAAATCGCGGTCAAAACTGTTCCACTCTTGGAGCCAACCAAGAAACCAAATCGTGTTTTCCAGTGGAGTGCCCGGTACACGGACATTATTCAGAGTGGTCTGTATTTAGCAACTGTAGCAAAAGCTGCGGGAATGGAATTAAGAAAAGGACCCGAAATTGCTCAAATCCCGAACCAAGCCACGGAGGTAGAAATTGTTCCAATTTAGGATTAGGAATCGAAGCAATAGCATGCAACACACAACCATGTCCCATAAATGGAGGTTATAGCGAATGGACGGAGTTTTCTCTATGTACAGTCTCTTGTGGAAACGGAACGAGGAAAAGAACTCGTAGTTGCTCAAATCCACTACCTAAACATGGCGGACGGAATTGTTCGTATTTCGGATCAAATCTAGAAATTGAAATTTGTAACACGAATATTTGCCCTATTCACGGTGGCTTTGGTGAATGGACGTCATTTAGCGAATGTACAAAATCGTGCGGAAATGGCACACAAAGGAGAACTAGAAATTGTTCTAATCCCGAACCGAAGCACGGAGGAAAGGAATGCTCGGGTTTGGGACCACATTCAGAGACACGACCGTGTAGTACTCACCATTGTCCAGTAAATGGCGGTTACACGCAATGGATGCGATTTAGTCGTTGTTCAAAAACGTGTGGGAGAGGTATAAAGAAAAGGTCGCGTACATGTTCTAATCCAGAACCTAAGTACGGAGGAAACAATTGTAAACATCTTGGTGCTGCAGAAGATGTACAGTCTTGTTTTTTGCGTCTGCTGTGCCCTACGCACGGTGGATTCACTGAGTGGACGAAATTCAGTGAATGTACCAGGACGTGCGGTGTTGGTATCAAAAACAGAACAAGATATTGCACTAATCCGATTCCCAAGAATGGAGGAAACGATTGCAGTGGTAGTTCGATTGAAATTAAAGTGTGCAATGTAGATACATGTCCTGTCGATGGGAATTATGCTCAGTGGTCAAAGTTTAGTGCTTGTACCCGAACGTGTGTTAATGGCACAATGAAAAGGACACGAAATTGCACCAATCCTGTTCCGAAATTTGGAGGAATGGATTGTTCTCTGTTAGGACCAGCAGTGGAAATTAGAAACTGCAATACGTTCCCTTGTCCAGTTGACGGTAATTACTCATCGTGGTCCAATTTTAGTATTTGTAGTAAAACTTGTGGTAATGGTACAATGGAAAGACGGAGGAATTGCTCAAGTCCTAACCCCAATCATGGCGGCAAGAATTGTTCGCTCTTGGGCCCTTCTAAAGAGGTAAGAAGTTGTAATCCATTTCCTTGTCCAATCCATGGCAACTTTTCACCGTGGTCGATCTTCAGTGTTTGTAGCAAAAGTTGTGGAAATGGAAAAAAGACAAGAACTAGAGATTGTTCAAATCCTACCCCACAACATGGTGGCAAAAACTGTTCTGCAATAGGACCTTCGAAAGAAGTCCGTAGGTGTAATCTCTTTCCATGTCCAATTCATGGAAACTATTCGTCGTGGTCAAATTTTAGCATTTGTAGCAAAAGTTGTGGTAACGGTACAATGACAAGGACGCGAGGATGTTCAAATCCGACACCAAAACACCGTGGAAAAAACTGTTCCTTGTTAGGCCCGTCTAAAGAGGTACGAAACTGCAATTCATTTCCTTGCCCAATTCATGGCAATTATTCTTCGTGGTCGAGCTTTGGTACTTGTAGCAAAAGTTGTGGAAATGGCACAATGATACGATCCAGAAGCTGCACTAAGCCTGAACCTCGCCACAACGGAGAGAACTGCTCTTCATTTGGATCGCCAATAGACATCCAACCTTGCAATGTTTTCCCGTGTCCCATAAATGGTGGATACACTGATTGGGGAAATTTCACACTATGTACGCTATCGTGCGGCATTGGTACTAGGTATAGAACTAGAAATTGCTCGAATCCTGTGCCTCAACATGGGGGTCAAAATTGCTCTAAAATTGGACCAGAGATGGAAGAAACAACGTGCAACGAGAATCCTTGTCCAATAGACGGTGGCTACACGCCGTGGTCCGAGTTTAGCAAATGTTCTTCAAGCTGTGGAAATGGTACTCTTAACAGAACGAGACAATGTTCCAATCCAGCTCCTCAGTTTGGTGGTCGAAACTGCACCAGGTTCGGTTCCACTATCGATGTGCAACACTGCTACTTAAGACCCTGTCCTATTGATGGAGGTTATAGCGAGTGGTCTAACTTCACTGAATGTACGCGATCGTGTGGCAATGGTGGCAAACAGAAACGATCACGGCAATGCAGCAATCCTGCTCCAAAACATGGCGGACGAAATTGCACGAGTCTTGGTCCTGAGGTAGACGTGCAATCGTGCAACACATTCCCATGCCCCATCCACGGTGGATACGGCGAGTGGACTGGATTTGAGTCATGCACGCGCACCTGTGGCGGAGGTATGCTCATCAGGAGACGAAATTGCACCAATCCCCCACCCGCTCACGGAGGACGGGATTGTAGTGATCTGGGTCCAAGTATGGAGTCTATCGAATGCAATACTCAAAAATGTCCAGATATTGTGTTCAATGTGGTAGTGAACCTCACATCAGAGAAGTGGCATGCAGGTCTAGCAAGTGGAAAGGGTAACCGAAAGTACGACTTCCTTAGCCTGACTATCCAGTTTGGGGTTACAGATATCATGGGCGAGAATACAGTATCTGCTGTGAGCGATTTTTCCTTCAGACAGGGAAGCGTCATTGCCGGTTTCTCCATCAGCTTGCTTCACCGTTACTATCTTGGAATCACTCCGCTACAAGATTCTATCATCATCGAAGGCAAAATAGAAGATACGCTTCCGGTTTCTCTTATTAATCTCACATCACCGGATGTCCCTGTGGTGGCGCCTGTAAACATCACGGCTGTTAATACAAGCTCTACCTCAATTCTCCTCAACTGGTTTCCCATACCCTTGCACTTCTCAAATGGGCACGTCCAGGAATACAGAATTACTTACATCGAAGCAGACAGCAATGACGTGCAAAGAAGATGGCAGAAAGTTATCGACGGAGAAACGCTTACATCTCACGTGACGGGACTGAAGAAGTTCACGAAATATCGGTTCAGAGTGGCGGGAATTAATCGGCGAGGTGTTGGAGTGGATAGTATGCCGTTAATAGCAAGTACCGACCAAGATAAACCGAGTTCATCGCCGACAAGTGTTAAAGCCAACAGCAAAGGCAGCACAACTATTTACGTAGAGTGGTCTCCAATTACCAAACAGTTCGTCCATGGAATCCTATTGGGATACCACATACACTACACTAACTTGGATCCCGAGGGATATGGTGACGTCAGTACGGGTATTCACCCGACTGGCGCGACTAACACCTCGACGCTGCTAAAAGGTCTTCTAAGGTTTACTTCTTATCGCATTCAAGTCAGCGCTTTTACTGTTAAAGGAGATGGGCCGATGACGCAAGCAGTGTTGGTTAAGACGGAAGAGGACGTTCCCAGCAAGCCTCCAGCAAATGTCACAGGCAACAACCTCACATCGACAAGCATTGTGGTCCGTTGGAACCCAATCCCACCGCGCTACGTGCATGGCGTTCTCCTTGGCTACAATGTGTCTTACATAGCAACGGACCTCGGGAACAATCGAGAGTGGAATGACTCTGTGGTCAACCAGTCCACGACGTCTGCGGTGATCACCAATTTGCGCAAGTTCACAAAGTACATGGTATCTGTTGAAGGGTTTACCAGCAAAGGAAGTGGGATTGAAAGCAAATGTGTGGCAATTACAACGGCTGAAGACAAGCCAGACGCTTTTCCTGGCAATGTTGCTGGCTTCAACAATAGTTCCACATCCCTGTACGTGGAATGGCATCATATTCCACCACAGCACAGAAATGGCATCCTTTTAGGCTACAACATTTCCTATTTTCCGAAAAAGTCTAATAAACCAATCAAGGATGAAACTGTCGATAGCACCAGGTCATCGACGACACTTTTGAAGTTGAAAAAATACACTTGGTACGTCATTAGAGTGGCCGGGTACACTAGCAAAGGACTGGGTCCACACTCTCTTCGACCGCTAGAGATTAGGACTAGCGAAGATGTCCCCAGTAAACCCGTGATAACCATGAAGGCTCGGAACACAAGCCACACCAGTCTCCTTGTAGAATGGAGCGATATACCACCTGACTTCGTTCACGGGATCCTATTGGGCTTCAGGGTGATCTTCTGGCGATCCAACGAATCACGTGACACGAACGAGACGAGAAAAATTGCTCCCGACAAAAGCTCCGTCCACTTGAGTGATCTGTGGATTTACACCAAATATAGAATACAAATTCGTGGTTTCACGGTTGCCGGAGACGGAGCTGTTAGCAAAGAGCTAGAAGTGTCAACGGATGAATTCACGCCCAGTCTGCCCCCTATCAATGTCCGAGCAATGAACAAGACAAGCCCTACAAAGATCGTGGTCCAATGGAACCCAATCCCCGATCAATTCTACGTCCATGGTATATTACGCGGTTACAAAGTGCGGTACAAAGCGATAGCGATATCAAACAAGAAACTTGAGAAAGAGCTGGAAACTAGTGAAGTGACAGTTCGAAACGTGAGCTTGTCCGCCATCCTTGAGAACTTGAATGCATTCACCAGATATGAGATTGAAGTTCTGGCATTTACGATCAAAGGAGATGGCGTTACGAGTAAACCTATAAAAGCAGAAACGTGCAACTGTCACAGTACCGTCTTCACCAATTGGTGGATCAACCCGCCTTACGTGGACAACCCGGGGTCAAACAAAAGCGGTATCATCACGCCTATCTTAATAGAATCCGTGTATGCGTGCTGCGGAAACTGCACCGAGCACGGGACAACCCGAGTAGATTTCGACAGGACTGCCTCGGGACGTCCCGCAAAGAAAGCAGGGCTTGTACAGTTCAAGAGCAACTTTGAGGAAAATACTGAACTGCAATTTCCAGTGTATGGGTTTATGGATCAGACGCGATACTCCGACAATTATGGTTTTGTTCCTTTCGTCCAGTCACCAGGGTTAGCGCTGATCATCATCGGCGACGAAAAAGGCACTGCTGCAACCCTGCTGCTGAAATCCCTCGCGTTTTGCTTTCCGATACTGTTTCTGTCGATTGCGATGCTTTGGGTGTCCAGCTTAGCAATGTGGTTTGTGGAAACTACCTCCAACGAACGCCATTTTCCTCGCAACGTTTTGCAAGGATGCTGGGAAGCCATGTGGTGGGCATTTGCATCAATGACTACACTTGGCTATGGTGATCGGATCCCAAGAACTCTATTTGGTCGGCTGGTGTGTTTGTCTTGGATTCTATTGGGTCTGATCATGGTCACGTGTTTTAATTCTACCATGACAACGCTGCTGACCGCAAGGATCTTGGACAAAGAAGTGACCTTATATGGAACAAAGATTGCTGCCATTCAGAACTCCTCTGGATATCGTATCGCTATCAGAAAAAATGCCCGAGTCAACCCAAATGGCAAGGAATACACCAATCTGAAAGAGGTTTACGAGGCGCTGACCAATCGCGAAGTCAAAGGACTACTTATCGACGCTTTCACAGTGGGAAGCAAGAAAGAACTGTTCAATCGACGGGATCTCCGAATCAGTAAACTGCTCGACTACTCGGCCGCTTATGGCGTAGTGCTAGGAGGTGAAGCGAAGAAGCTTCAAAAGTGTTTACAGAAATACGTCAGCGAGCAACGCTCTGATATATCGAAGATTGTGGAGAAGAACGTCGAGACGATAGAGATTACACCCAAGAGTATGTCCGTGGAACGATCAAGCGGTCTTTTTGACCCGCGGTTTCCAACATACGTTCGTGCGCTGATCGTCTGTGGCGTGCTGCTTGGTGTCCTGTGGCTGGTTGGAGCGAAGTTTGAGTTTGCAAAGAAAATGGGATGGATCAAGTTCAGAAGAAAAGGCACAGAAAAATGTCATTCGCGGCTTCCAAGGCGTGTCGAGTTGACGAGACATAAAGAGGAATTGAAAGTCGAAATGTCTAGAATAGTGACGATTTTCAAGGTCAACTGCTCGCGTCGAATACAGGTTCTACGACAAAGACACAAGAAAGAGCTTCTCCATCTAGCCCGGCTGAAGAGACAAGCTGACAGTGCGCCGGTCATCCAGAAAGGTTCATTTCGTAGGGACAGTTTATTTAGCTTCGCTTTCGGGTTCAAAACTCCAGAGATGAATCATGGGTCGGAGAGAAATGGTCACACGAAACATGATTCGTCGCTGAAAGATGACACTGTAATTGAAACCGTGGTATAG

Transcript

OS493_025674-T1

Protein

OS493_025674-T1

MQEWNNRDWNHVALKWDNNTGSLRIYLNCTIVKVVNKSAKAEPLEDDKASRLILGASHAKKKNMKLMVDEFAIWNSTLSDDTLCKVFRIRSVNGNYSDWSEFGPCSVSCGNGTMTRTRNCTSPSPKNRGQNCSTLGANQETKSCFPVECPVHGHYSEWSVFSNCSKSCGNGIKKRTRNCSNPEPSHGGRNCSNLGLGIEAIACNTQPCPINGGYSEWTEFSLCTVSCGNGTRKRTRSCSNPLPKHGGRNCSYFGSNLEIEICNTNICPIHGGFGEWTSFSECTKSCGNGTQRRTRNCSNPEPKHGGKECSGLGPHSETRPCSTHHCPVNGGYTQWMRFSRCSKTCGRGIKKRSRTCSNPEPKYGGNNCKHLGAAEDVQSCFLRLLCPTHGGFTEWTKFSECTRTCGVGIKNRTRYCTNPIPKNGGNDCSGSSIEIKVCNVDTCPVDGNYAQWSKFSACTRTCVNGTMKRTRNCTNPVPKFGGMDCSLLGPAVEIRNCNTFPCPVDGNYSSWSNFSICSKTCGNGTMERRRNCSSPNPNHGGKNCSLLGPSKEVRSCNPFPCPIHGNFSPWSIFSVCSKSCGNGKKTRTRDCSNPTPQHGGKNCSAIGPSKEVRRCNLFPCPIHGNYSSWSNFSICSKSCGNGTMTRTRGCSNPTPKHRGKNCSLLGPSKEVRNCNSFPCPIHGNYSSWSSFGTCSKSCGNGTMIRSRSCTKPEPRHNGENCSSFGSPIDIQPCNVFPCPINGGYTDWGNFTLCTLSCGIGTRYRTRNCSNPVPQHGGQNCSKIGPEMEETTCNENPCPIDGGYTPWSEFSKCSSSCGNGTLNRTRQCSNPAPQFGGRNCTRFGSTIDVQHCYLRPCPIDGGYSEWSNFTECTRSCGNGGKQKRSRQCSNPAPKHGGRNCTSLGPEVDVQSCNTFPCPIHGGYGEWTGFESCTRTCGGGMLIRRRNCTNPPPAHGGRDCSDLGPSMESIECNTQKCPDIVFNVVVNLTSEKWHAGLASGKGNRKYDFLSLTIQFGVTDIMGENTVSAVSDFSFRQGSVIAGFSISLLHRYYLGITPLQDSIIIEGKIEDTLPVSLINLTSPDVPVVAPVNITAVNTSSTSILLNWFPIPLHFSNGHVQEYRITYIEADSNDVQRRWQKVIDGETLTSHVTGLKKFTKYRFRVAGINRRGVGVDSMPLIASTDQDKPSSSPTSVKANSKGSTTIYVEWSPITKQFVHGILLGYHIHYTNLDPEGYGDVSTGIHPTGATNTSTLLKGLLRFTSYRIQVSAFTVKGDGPMTQAVLVKTEEDVPSKPPANVTGNNLTSTSIVVRWNPIPPRYVHGVLLGYNVSYIATDLGNNREWNDSVVNQSTTSAVITNLRKFTKYMVSVEGFTSKGSGIESKCVAITTAEDKPDAFPGNVAGFNNSSTSLYVEWHHIPPQHRNGILLGYNISYFPKKSNKPIKDETVDSTRSSTTLLKLKKYTWYVIRVAGYTSKGLGPHSLRPLEIRTSEDVPSKPVITMKARNTSHTSLLVEWSDIPPDFVHGILLGFRVIFWRSNESRDTNETRKIAPDKSSVHLSDLWIYTKYRIQIRGFTVAGDGAVSKELEVSTDEFTPSLPPINVRAMNKTSPTKIVVQWNPIPDQFYVHGILRGYKVRYKAIAISNKKLEKELETSEVTVRNVSLSAILENLNAFTRYEIEVLAFTIKGDGVTSKPIKAETCNCHSTVFTNWWINPPYVDNPGSNKSGIITPILIESVYACCGNCTEHGTTRVDFDRTASGRPAKKAGLVQFKSNFEENTELQFPVYGFMDQTRYSDNYGFVPFVQSPGLALIIIGDEKGTAATLLLKSLAFCFPILFLSIAMLWVSSLAMWFVETTSNERHFPRNVLQGCWEAMWWAFASMTTLGYGDRIPRTLFGRLVCLSWILLGLIMVTCFNSTMTTLLTARILDKEVTLYGTKIAAIQNSSGYRIAIRKNARVNPNGKEYTNLKEVYEALTNREVKGLLIDAFTVGSKKELFNRRDLRISKLLDYSAAYGVVLGGEAKKLQKCLQKYVSEQRSDISKIVEKNVETIEITPKSMSVERSSGLFDPRFPTYVRALIVCGVLLGVLWLVGAKFEFAKKMGWIKFRRKGTEKCHSRLPRRVELTRHKEELKVEMSRIVTIFKVNCSRRIQVLRQRHKKELLHLARLKRQADSAPVIQKGSFRRDSLFSFAFGFKTPEMNHGSERNGHTKHDSSLKDDTVIETVV

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF07885	Ion_trans_2	Ion channel	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013099	Domain	Potassium channel domain	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR052065	Family	Complement and asymmetry regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906	PROPERDIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_025674-T1 global RNA-seq network