Gene detail

Detailed information of OS493_025151-T1 in Lophelia pertusa

Genomic Location: scaffold_121:518604...544660
NR annotation: KAJ7390451.1, DNA damage-binding protein 1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_025151-T1

ATGACTCACAACTATGTAGTGACGGCTCACAAGCCAACAGCCGTCAATGCAGCCGTGGTTGGCAATTTCACAGCCTGCGATGACCTGAATTTGATCATTGCAAAGAACACTCGGCTAGAAATCCATGTTGTGACACCGGAGGGTTTGAGACCTCATCTCGACATCGGAATATATGGAAGAATTGCTGTAATGGAACTATTCAGACCTACGAATGAACCCCAGGACCTTTTATTTATTCTCACAGCAAGGTACAGGGTATTCATTCTTAGCTACAAGCCAGAGACTGGTGATGTTGTCACCAGAGCTTGTGGAGATGTCCAGGATCGTATTGGCCGGCCATCGGACACAGGCTTGATTGGCATCATAGACCCACAATGCCGTATGATTGGTCTTCGGCTTTATGATGGACTCTTTAAAGTGATTCCTTTGGAACTGGACTCGAACAAAGAACTCAAAGCTTTTAACATCAGGCTTGAAGAGCTGCATGTGATTGACATCGCTTTCCTTCATGGCTGTCAAGTCCCGACAATTGTTTTTATTTATCAGGATCCTCATGGCCGCCATGTCAAAACATATGAGATTATCCTCCGAGATAAAGAGTTCAACAGGGGACCATGGAAACAAGACAATGTGGAGGTGGAGGCATCAAGGGTTATTGCAGTTCCAGAACCACTTGGTGGGGCCCTCATTATTGGACAAGAATCCATAACGTACCACAAAGGAGCTAATTATCATGCCATCGCTCCTCCAGCTCTGAAGCAAAGTACCATCACGTGCTATGGGAAGATCGATGCTAATGGCTCACGGTATCTCCTGGGTGACATGAATGCCCGTCTGTTCATGTTACTTCTCCAGAGGCAGGAACTCATGGATGGTAACATTGAAGTCAAAGATCTCAAACTGGAACTTCTTGGTGAGACTTCAACGGCACACTGCCTGACATACCTGGACAATGGAGTGGTTTTCATTGGATCAGCGCTCGGAGACTCGCAACTTGTTAAGCTCAACACAGAGGCTAATGAGAATGGCTCACATGTTCATGTCATGGAAACGTTTACAAACCTTGGACCTATTGTTGACATGGTGGTGGTTGACTTGGAAAGACAAGGCCAGGGACAGCTGGTGACGTGTTCTGGTGCACTCAAGGAAGGTTCATTACGGATTATAAGAAATGGAATTGGTATTCATGAACATGCAACCATATCAGACCTGGTCGGCATTATGGGCATCTGGCCCCTAAGATTACGAAAGACGGTGAAGAATTTTGATGATGCATTGCTTCTTTCCTTTGTTGGACAGAGCAGAATATTAGCTCTTACTGGAGAAGAAGTTGAAGAGACAGAGATCCCTGGGTTTGATGATAATCAGCAGACATACTTTTGTGGAAATGTCACTGGTGACCAAATCATTCAGGTTACCACATCATCTGTGCGTCTTGTTAGTTGTGAGACAAGAGAACTTGTTGGTGAATGGCGACATCCGACTGGTAAGAACATCAGCGTCTGCGCGTGCAACTCTGAACAACTTGTCGTGGCTGTGGGCTGTGAGTTGTACTATCTGGAGATACTTGTTGGCAAAATAAATCTATTCAGCCAAACCACTCTGGAACATGAAGTTGCCTGTCTGGATATCACACCAACTCATGAAACCGACACCAGAGCTGACTTAGTAGCTGTAGGCTTATGGACGGATATTTCAGTGCGGGTATTGAAACTACCAGACTGTGAACAACTGTTTGTTGAAATGCTTGGTGGAGAAATAATTCCTCGTTCCATACTGAAGACATCCTTTGAAGGCATTCACTATCTGCTGTGTGCACTGGGAGATGGAACCTTGTTTTATTTCACCATGGATCCAAACACTGGATCACTCTCTGAGAGGAAGAAAGTAACCCTGGGCACCCAGCCTACTATGCTAAGAACATTCAAGTCACTCTCTACAACAAATGTGTTCGCTTGTTCTGATCGACCTACGGTGATCTACTCCAGTAATCACAAACTCGTGTTCTCCAATGTTAATCTCAAGGAAGTGAATTACATGTGTCCACTAAACTCTGAAGGATTCCCTGACAGTCTTGCTGTAGCCAGCGAGGGAGCACTGACGATAGGAACAATTGATGAAATCCAGAAGCTTCACATTCGAACTGTTCCTCTTGGAGAGACACCAAGGCGTATTGCGTACCAGGAGTCCACGCAAACATTTGGCGTGATCTCAATGCGCATCGAGGTCCTGGATCCGACGTCAAATACCACCCGACCCACCCACCCCAGCGCCAGTACCATGGCACAGAACATAACGTCCAGTGTAACGGCTGGCATACCAGGGACTTCCGCCGGAGGTTCAGCAGGAAACAGAGGAGCCGCTGACGGTATCACGTTTGGTGATGAGGTGGAGAGAAGCAGTTTGTTGATCATTGATCAGCACACCTTCGAAGTGACCCACGCTCACGATCTTCAAGATCACGAGTGTGCCACAAGCCTGATATCGTGCACGTTATCTGGTGATCCAAACAGCTCTTACACCAGTGGCACTACTAACACTTACTACTGTGTTGGAACTGCGTACGTCTTCCCTGAAGAGGCTGAACCCAAAACAGGTCGACTGATCTTATTCCAGCTGCTGGAAGGAAAACTTGTTCAAGTCGCTGAGAAAGAAGTCAAAGGAGCCGTGTACTCACTTGTAGAGTTCAACGGAAAGGTCTTGGCTGGAATCAACAGCACTGTCAGTATTTATGAGTGGACGGCAGATAAGGAGTTGCGTGTGGAGTGCAGCTTTTTGAATAACATCCTGGCGTTATATCTCAAGTCCAAAGGGGATTTCATATTGGTTGGAGATTTGATGAGGTCTATGACCCTGTTAGCCTACAAGTCGATGGAAGGAAGTTTAGAGGAGATTGCGCATGACTACAGCCCAAACTGGATGACAGCAGTTGAGATTCTTGATGACGACACTTTCCTCGGAGCCGAAAATTCGTTCAACCTTTTCACGTGTCAAAAGGACAGCGGGTCAGCGGCTGATGACGACAGGTCGTATCTTCAAGAGGCCGGACAGTTTCACCTGGGCGAGTTTGTTAATGTCTTTAGACACGGGTCTCTGGTGATGGAACATCCCGGTGAAGCTTCTACTCCATTTCAAGGTTGCATTCTTTTCGGTACTGTTAATGGTACAATCGGAATTGTTGGCCAGTTACCTCAAGAACTGAGTGTGTTCTTGACACAAGTCCAAGGGAAACTCAGTAAAGTGATCAAGAGTGTTGGAAAGATCGACCATGGATTATATCCTTTTCGATTCTTTATTTCGGGCAATGTAAGGGAGGAATAA

Transcript

OS493_025151-T1

Protein

Uniprot

Uniprot term	Description
Q3U1J4	DNA damage-binding protein 1 OS=Mus musculus OX=10090 GN=Ddb1 PE=1 SV=2
Q6P6Z0	DNA damage-binding protein 1 OS=Xenopus laevis OX=8355 GN=ddb1 PE=2 SV=1
A1A4K3	DNA damage-binding protein 1 OS=Bos taurus OX=9913 GN=DDB1 PE=1 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DDB1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10433	MMS1_N	Mono-functional DNA-alkylating methyl methanesulfonate N-term	Repeat	Interproscan
PF03178	CPSF_A	CPSF A subunit region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR018846	Domain	Cleavage/polyadenylation specificity factor, A subunit, N-terminal	Interproscan
IPR050358	Family	RSE1/DDB1/CFT1/CPSF1	Interproscan
IPR004871	Domain	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10644	DNA REPAIR/RNA PROCESSING CPSF FAMILY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0035861	Cellular Component	site of double-strand break	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10610	DDB1; DNA damage-binding protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Expression pattern

Expression trend for OS493_025151-T1 global co-expression network