Detailed information of OS493_024818-T1 in Lophelia pertusa

Genomic Location: scaffold_117:1036580...1038822
NR annotation: KAJ7378153.1, U6 snRNA-associated Sm-like protein LSm2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9Y333U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens OX=9606 GN=LSM2 PE=1 SV=1
O35900U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus OX=10090 GN=Lsm2 PE=1 SV=1
Q54TF6Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum OX=44689 GN=lsm2 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR047575DomainSm domainInterproscan
IPR016654FamilyU6 snRNA-associated Sm-like protein LSm2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13829SNRNP CORE PROTEIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0005688Cellular ComponentU6 snRNPInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:1990726Cellular ComponentLsm1-7-Pat1 complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12621LSM2; U6 snRNA-associated Sm-like protein LSm2-Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_024818-T1 global co-expression network
TOP