Detailed information of OS493_024616-T1 in Lophelia pertusa

Genomic Location: scaffold_116:135204...172500
NR annotation: KAJ7383931.1, Intersectin 1 (SH3 domain protein) [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9WVE9Intersectin-1 OS=Rattus norvegicus OX=10116 GN=Itsn1 PE=1 SV=2
O42287Intersectin-1 OS=Xenopus laevis OX=8355 GN=itsn1 PE=1 SV=2
Q9Z0R4Intersectin-1 OS=Mus musculus OX=10090 GN=Itsn1 PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|SH3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16652PH_13Pleckstrin homology domainDomainInterproscan
PF14604SH3_9Variant SH3 domainDomainInterproscan
PF00621RhoGEFRhoGEF domainDomainInterproscan
PF12763EF-hand_4Cytoskeletal-regulatory complex EF handFamilyInterproscan
PF00168C2C2 domainDomainInterproscan
PF00018SH3_1SH3 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000261DomainEH domainInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR001452DomainSH3 domainInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR035899Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR000219DomainDbl homology (DH) domainInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR000008DomainC2 domainInterproscan
IPR051480FamilyEndocytic & GEF AdapterInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46006RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM AInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0035025Biological Processpositive regulation of Rho protein signal transductionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20045ITSN; intersectin-Membrane traffickingko04131deepkoala

Expression pattern
 Expression trend for OS493_024616-T1 global co-expression network
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