Detailed information of OS493_024400-T1 in Lophelia pertusa

Genomic Location: scaffold_113:769156...778133
NR annotation: KAJ7357588.1, Vacuolar protein sorting-associated protein 18 like protein [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P59015Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio OX=7955 GN=vps18 PE=2 SV=2
Q9P253Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=VPS18 PE=1 SV=2
Q8R307Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus OX=10090 GN=Vps18 PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00637ClathrinRegion in Clathrin and VPSRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000547RepeatClathrin, heavy chain/VPS, 7-fold repeatInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23323VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0006904Biological Processvesicle docking involved in exocytosisInterproscan
GO:0007032Biological Processendosome organizationInterproscan
GO:0007033Biological Processvacuole organizationInterproscan
GO:0007040Biological Processlysosome organizationInterproscan
GO:0008333Biological Processendosome to lysosome transportInterproscan
GO:0030674Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0030897Cellular ComponentHOPS complexInterproscan
GO:0048284Biological Processorganelle fusionInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09230SCAN; SCAN domain-containing zinc finger protein-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_024400-T1 global co-expression network
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