Detailed information of OS493_023992-T1 in Lophelia pertusa

Genomic Location: scaffold_109:980608...981844
NR annotation: KAJ7390603.1, positive regulation of rhodopsin protein expression [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9TTF0Photoreceptor-specific nuclear receptor OS=Bos taurus OX=9913 GN=NR2E3 PE=1 SV=2
Q9Y5X4Photoreceptor-specific nuclear receptor OS=Homo sapiens OX=9606 GN=NR2E3 PE=1 SV=1
Q9QXZ7Photoreceptor-specific nuclear receptor OS=Mus musculus OX=10090 GN=Nr2e3 PE=1 SV=1
 Gene family
Gene familySubfamily
Transcription Factors FamilyESR-like
Transcription Factors FamilyMiscellaneous
Transcription Factors FamilyRXR-like
Transcription Factors FamilySF-like
Transcription Factors FamilyTHR-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00104Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033544FamilyNuclear receptor subfamily 0 group B member 1/2Interproscan
IPR000536DomainNuclear hormone receptor, ligand-binding domainInterproscan
IPR001723FamilyNuclear hormone receptorInterproscan
IPR035500Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24081NUCLEAR RECEPTOR SUBFAMILY 0 GROUP BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003714Molecular Functiontranscription corepressor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008134Molecular Functiontranscription factor bindingInterproscan
GO:0043433Biological Processnegative regulation of DNA-binding transcription factor activityInterproscan

Expression pattern
 Expression trend for OS493_023992-T1 global co-expression network
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