Gene detail

Detailed information of OS493_023902-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_023902-T1	DIHYDROXY-ACID DEHYDRATASE DAD	scaffold_108	539366	548729	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_023902-T1

ATGAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTCTGTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTGATCTCTGGAGACAAGTGTCTTATCTTTGGAGACAAGTGTCACATCTCTGGAGACAAGTTTCTCATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAAACAAATGTCTGATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTCTGTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTCTGTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTCTGTGGAGACAAGTGTCTCATCTCTGGAAACAAATGTCTGATCTCTGGAGACAAGTGTCTCATCTCTCTGTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATGTCTGGAGACAAGTGTCTCATCTCTGGAAACAAATGTCTGATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCCCATCTCTCTGTGGAGACAAGTTTCTCATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTCTGTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAAACAAATGTCTGATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTCTGTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTCTGTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCACATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAAACAAATGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAGACAAGTGTCTCATCTCTGGAAACAAATGATGGCATGATCTGCCTTGCTGGTTGTGACAAGACAATACCTGGTGTAACCATGGCTTTACCAAGACTCGATGCATTTGGTGTTGTTATTTATGGTGGAACAATGCTTCCTGGCTGTGGAAAGAAACATAAAAATTTGAGCGCAGGGAGCCCATTTGAGGCATTAGGTTCCTATAGCACAGGCCTAATGGACATCGAAGATCTGAAGGACATTGAGTGTCATTCAATACCTGGGGCTGGAGCCTGTGGAGGGATGTTTACAGCAAACACCATGTCATCTGTTGTAGAAACTCTTGGCTTGTCATTACCAGGGAGTGCGTCCGGTGTTGCTGTAGATAATCAAAACAAGGTGACCGAGAAAAAGAAGATAGAAGTGAAGGAAGCTGTCAAGGCATTGTTTTCTCTAATGAAATCAGGAAAAACAGCAAAGAACATCATGACACGAAAGGCCTTTGAGAACGCTGTATCTGTCATGTTTGCATTAGGTGGATCAACTAATGGAGTTCTTCACTTGTTGGCTTTGGCTCATGAATCTGATGTAGAATTTTCCATTGAAGATTTCAACACTGTAGGAGGGAGGGTTCCATTGATTGCTAATGTCAAACCACACGGCAAGTATCAAATGGCTGATTTGGACAAGATTGGAGGTGTCCCGATCGTGTTAAAGGAACTTCTTGAGAATGGCTTTCTTCACGGAGACCAAGTCACAGTTACAGGAAAACTATGGCCGAGAATCTTACACATGTGA

Transcript

OS493_023902-T1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	TF_bZIP
Transcription Factors Family	TF_bZIP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00920	ILVD_EDD	Dehydratase family	Family	Interproscan
PF21300	LbR_Ice_bind	Grass antifreeze beta roll	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000581	Family	Dihydroxy-acid/6-phosphogluconate dehydratase	Interproscan
IPR020558	Conserved_site	Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site	Interproscan
IPR037237	Homologous_superfamily	IlvD/EDD, N-terminal domain	Interproscan
IPR048518	Repeat	Ice-binding protein, beta roll	Interproscan
IPR050165	Family	Dihydroxy-acid dehydratase IlvD/Edd	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21000	DIHYDROXY-ACID DEHYDRATASE DAD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004160	Molecular Function	dihydroxy-acid dehydratase activity	Interproscan
GO:0009082	Biological Process	branched-chain amino acid biosynthetic process	Interproscan
GO:0016836	Molecular Function	hydro-lyase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_023902-T1 global RNA-seq network