Detailed information of OS493_023158-T1 in Lophelia pertusa

Genomic Location: scaffold_100:1041685...1043154
NR annotation: KAJ7371817.1, hypothetical protein OS493_023158 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P46850RNA-splicing ligase RtcB OS=Escherichia coli (strain K12) OX=83333 GN=rtcB PE=1 SV=3
P0DX92RNA-splicing ligase RtcB1 OS=Escherichia coli (strain ATCC 25922 / DSM 1103 / LMG 8223 / NCIMB 12210 / NCTC 12241 / WDCM 00013 / Seattle 1946) OX=1322345 GN=rtcB1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01139RtcBtRNA-splicing ligase RtcBFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052915FamilyRNA-splicing ligase RtcB-likeInterproscan
IPR036025Homologous_superfamilytRNA-splicing ligase RtcB-like superfamilyInterproscan
IPR001233FamilyRNA-splicing ligase, RtcBInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43749RNA-SPLICING LIGASE RTCBInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003909Molecular FunctionDNA ligase activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0008452Molecular FunctionRNA ligase activityInterproscan
GO:0030145Molecular Functionmanganese ion bindingInterproscan
GO:0042245Biological ProcessRNA repairInterproscan
GO:0006396Biological ProcessRNA processingInterproscan

Expression pattern
 Expression trend for OS493_023158-T1 global co-expression network
TOP