Gene detail

Detailed information of OS493_023079-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_023079-T1	SET AND MYND DOMAIN-CONTAINING PROTEIN 4	scaffold_100	273030	282511	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_023079-T1

ATGCTTCAGCTTCTCTGTCAGTTGTACTTCAAAAAAAAGTCCTTCAATGATTGTCTTTGCACAGGTCGCAAACTGAAAGACACTTACAAGGGAGAGAAAAACGAGACCAAAGCGACACAGTGGAAGAAGTGGGGTAACGAGTTACACAAGGAAAGTAAATATGACTTGATGGCGGAATACTACACGCTTGCCTTGGAATTCACGCCGACATCAAACGCTGAGATCGTGACCGCTCTTCTGAGCAACCGTTGTTTGGCGTTGATCAACTTGAAGAAGTTTAACGAGGCTCTCGCAGACGCAGAAAAATGCACCAAAATTAGGCCAAAGTGGTTCCGGGGGCATTCTCGACTTGGAACTTGTCTTCTTCACTTGAATTCGAAAAATAACAAAGAAGCTCTGCAAGCGTTCTGTAAAGCACATACCTGCGCTCTCAACGACAAAGAAAAGCAGGCAACCGCACAAGAAGTGATTTCAACTGCTATGAACATAGAAGGTGGCGAGTCCCAGATTACGTGCCCATTGTCGTCCCAAGTACTTCAATTTCTGGTGAAAGAGGTGTGCGAGAAGAATGAATGGAAGAAACTAAGATTTCTATATCTTGGTACAGCAGCAAGATTACGAGGTTGTGCCAAGCCTCCACTTTTGGCTGCAATGGAAACGATGAAGTTTCCTTTAGCTGTGACACTGTTGAAAAACAACGCGGATCCATCTTGCATCGTTGGCCATGGCATTTTCATTAACAGAGAGGGTCAGCCAAAGCAGTGGCTTCAACTTGGTCGCCAAGCGCTGGACGCTAAAGACAATAAAAAGGCAGCAATGCTTCTCAATATGTCCCTTTACCTGTCGGATTCCAGCACAGAACAAGCAATCTTGCCACAGGTATACCACGCTCTGGCAGAAGTCCACTTCAACTTGAACGAGCATGAAAGATCCATCGACGCAGGAAAGAAATGTTTTAAATTGCGACCAATAAAATCAGAGGAAGAAGCTAAGAGATGGAAGGATCGAGCAGCCCACGCCTTCGAGTCACGTCACTACAACTTCTGTATTGATTACGTGAATTTGGCTTTGAAGTACACCCCTGCTGACTCAAAACAGACCTTTTCACTTCTGTTGTGCCAACGTTCGGAGGCCTCTCAAAAGCTAGGCGACTACGAACATGGCTTGGACGATGCCAAAAATGCAGCGATGATGAATCCAGGAATGTTGGAGGGATATTTGAATCAGCTTTATTGTTTCAAAGAACTAAAGAGAGAAAGAGACGCAATGCAAGTGATAAACGAGTGCCTTAAGAGAACAAGCGATGATAACCTCATGTATGGCCTTTTGAGTGACGCTCTTGACATAGCTGTCAACCTCAAAGAGGCGACATCAGCCCTCACAGCTCCTGTGCCGAGCTACCTGCTCACAAAACTGACGAGCAGCGTGATAAAGAAGAGGGATTGGCGCAAACTTAGAGCCTTGTATCTAGGAGGAGGAGGACCCAAGTCACAGCCAGTAGGAGATGGAGGACTGGCAACTGGCATTAGCGCATCAAGTGTCCCACTTGGAGAAATAATTTGTTCAACTGATCCTGAACGACTCCCGCTAATATCGGCTCTCCTTAAGTATGGAGCTTCAGCGAACGCCATTGAAGGATCGGATATAATACCTTTGGATGAAGCAACGAGACTGCAGAACCTACCTCTTGTGGAAATGCTGGTCCATAATGGAGCCAATTCATGTGTTGTGGGCAAAGACGGAGGGCCGATAATTCACCAAGCTTTGAGGATCGGCCTTCAAAATGGTACATTCAGATTCCTAGAAGCAATGTTGGCGTCTAAAATCCCTGAGATCGAGTCCGTCCAAGATGCCGATGGCGACACTCTCTATCATCTCGCATGTTATGGCAAGATGAACAAGAAGTCAGCAGTAAATAAGTGCAAAGCGATCCTGATACTTCGGGAAGCCAACATAAATCCGGATCTTCCAAACAAGACAAAGATTTATCCAATTGGAATGCTTTCTAAAAGTGATCCTCGTTGGAAAATGCTAAATACTGCGTTGGAAACTTACAGGTCCACTTCTTTCGTTTCTGCTTCCCCGGGGCAAACCCTGAAAACAAATCTAATGAAGAACATCATGAAGAGTTTCCCTTGA

Transcript

OS493_023079-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR052097	Family	SET and MYND domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46165	SET AND MYND DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0042826	Molecular Function	histone deacetylase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_023079-T1 global RNA-seq network