Detailed information of OS493_022917-T1 in Lophelia pertusa

Genomic Location: scaffold_98:985029...986045
NR annotation: KAJ7384283.1, hypothetical protein OS493_022917 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5FWM3Transcription factor Sox-3-B OS=Xenopus laevis OX=8355 GN=sox3-b PE=2 SV=1
Q6EJB7Transcription factor Sox-3 OS=Danio rerio OX=7955 GN=sox3 PE=1 SV=1
Q68FA4Transcription factor Sox-3 OS=Xenopus tropicalis OX=8364 GN=sox3 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF12336SOXpSOX transcription factorFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050140FamilySRY-related HMG-box transcription factorsInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR022097FamilyTranscription factor SOXInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10270SOX TRANSCRIPTION FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan

Expression pattern
 Expression trend for OS493_022917-T1 global co-expression network
TOP