Detailed information of OS493_022862-T1 in Lophelia pertusa

Genomic Location: scaffold_98:301392...318457
NR annotation: KAJ7384232.1, hypothetical protein OS493_022862 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P98165Very low-density lipoprotein receptor OS=Gallus gallus OX=9031 GN=VLDLR PE=1 SV=1
Q700K0SCO-spondin OS=Rattus norvegicus OX=10116 GN=Sspo PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00057Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036055Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR002172RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR050685FamilyLow-density lipoprotein receptorInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR023415Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24270LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan

Expression pattern
 Expression trend for OS493_022862-T1 global co-expression network
TOP