Detailed information of OS493_022623-T1 in Lophelia pertusa

Genomic Location: scaffold_95:171981...181133
NR annotation: KAJ7357813.1, Visual system homeobox 2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O42250Visual system homeobox 1 OS=Danio rerio OX=7955 GN=vsx1 PE=1 SV=2
Q61412Visual system homeobox 2 OS=Mus musculus OX=10090 GN=Vsx2 PE=1 SV=1
Q9IAL1Visual system homeobox 2 OS=Gallus gallus OX=9031 GN=VSX2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046HomeodomainHomeodomainDomainInterproscan
PF03826OAROAR motifMotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356DomainHomeobox domainInterproscan
IPR052294FamilyVisual system homeobox transcriptional regulatorsInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR003654DomainOAR domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46892VISUAL SYSTEM HOMEOBOX 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:1990837Molecular Functionsequence-specific double-stranded DNA bindingInterproscan

Expression pattern
 Expression trend for OS493_022623-T1 global co-expression network
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