Detailed information of OS493_022380-T1 in Lophelia pertusa

Genomic Location: scaffold_91:1060383...1068612
NR annotation: KAJ7390821.1, hypothetical protein OS493_022380 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZJW8Denticleless protein homolog OS=Gallus gallus OX=9031 GN=DTL PE=2 SV=1
Q6GPU3Denticleless protein homolog B OS=Xenopus laevis OX=8355 GN=dtl-b PE=2 SV=1
Q4V837Denticleless protein homolog A OS=Xenopus laevis OX=8355 GN=dtl-a PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR051865FamilyWD repeat-containing CDT2 adapter proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22852LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0030674Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11790DTL, CDT2, DCAF2; denticleless-Ubiquitin systemko04121deepkoala

Expression pattern
 Expression trend for OS493_022380-T1 global co-expression network
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