Detailed information of OS493_021986-T1 in Lophelia pertusa

Genomic Location: scaffold_87:1397343...1413874
NR annotation: KAJ7378682.1, hypothetical protein OS493_021986 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P35951Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2
P98158Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus OX=10116 GN=Lrp2 PE=1 SV=1
A2ARV4Low-density lipoprotein receptor-related protein 2 OS=Mus musculus OX=10090 GN=Lrp2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679I-setImmunoglobulin I-set domainDomainInterproscan
PF00058Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan
PF01392FzFz domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036790Homologous_superfamilyFrizzled cysteine-rich domain superfamilyInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR015526FamilyFrizzled/secreted frizzled-related proteinInterproscan
IPR020067DomainFrizzled domainInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR000033RepeatLDLR class B repeatInterproscan
IPR013098DomainImmunoglobulin I-setInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR011042Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR007110DomainImmunoglobulin-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11309FRIZZLEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0017147Molecular FunctionWnt-protein bindingInterproscan
GO:0035567Biological Processnon-canonical Wnt signaling pathwayInterproscan
GO:0042813Molecular FunctionWnt receptor activityInterproscan
GO:0060070Biological Processcanonical Wnt signaling pathwayInterproscan

Expression pattern
 Expression trend for OS493_021986-T1 global co-expression network
TOP