Gene detail

Detailed information of OS493_021986-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_021986-T1	FRIZZLED	scaffold_87	1397343	1413874	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_021986-T1

ATGTTCAATCACAGAACACAAGAAGAGGCTACGCTTGAGCTCAACCAGTTTGTTCCTTTGGTGGTGAAATCGGCTTGCTCGGACGATTTGCAGTTTTTCCTTTGTTCCGTGTACGCCCCGATGTGCTCAGAGTTAAATACTCCAATTCCGCCTTGCCGCTCTCTTTGTAACAGTGTTAAACACGGTTGTGAAGCGTGGATGAGACGTTCCGGCTTCACATGGCCAGAGAGTTTAACCTGTGATAGATTTCCAGAACTTGGTAAAGAGATCTGCGTTGGAAATATTAATACAAGCGAGGCTACTCGCCAGCCGCCGACAGCCAAGAGAGTCAAGAGAGCTTCAGATGAAGACGGCTTCATTCTGCTCGCCAATCGTAAAGACATACGCAGCATCAAGCTTGACTCAGCAACCGAACACACAATGATGGTCCCGCACCAGATGGCAGCAGTGGGAATAGATTTCGACTTTGATACGGGATTTATTTACTGGACTGATGTCACCATGGGTAACATTCAGCGCGCGCCGGTCAGTATCATCGATCAAAGCATGGCTGAGGTCCCAGGGTATGAGGTTGAAGTGGTGGTGCAAGGTCTTGGCTCGCCTGAAGGACTTGCCGTTGATTGGCTGAATAAGAAGATGTATTGGACAGACACAGGTACTGATATGATTGAAGTGGCTGATTTGAATGGCGACCACAGACTGCATTTGATTACAACAGGACTCAAGAACCCAAGAGCCATTGTTGCTCATCCTACTGCTGGATACATATTCTGGTCTGACTGGGGTAACCCAGCCAAAATTGAAAAATGCGCAATGAACGGAGACAGTACATCACGCCAAGTTCTCGTCAACCGAGGCATCGTGTGGCCAAACGGACTGACGATAGACTACCGTGAAGGTCGCCTTTGGTGGGTTGACGCTAGGCATGGTAGAGTTGAATCTACGGACTTGAACGGTGGAGATCGTAAGATGATCTTACATAGCAGGCGTCTTCGTCACACCTTTGACATCGCTGTCTTCCAAGACTCCATCTACTTGACGAAGCGACGCCAAGGACGTAGGATCCTTAAAATCGAGAAGGACACTGGCGGTGGAATGGTAAGAATAGCACGAGGCTTGTATAGACCGAGAGGACTCGCCATTTATCATCGATCGAGGCAGCCTGGAGCTAGAGGAGTTCATCCATGCAGTTCCTCTGCAGAGTCTGTCGGCTGTAGCCACATCTGTTTAACAGCACCAACAGATCTTTACCCAGATGGCTACACTTGTCACTGCCCACCAGGATTAGGTCTGCTGCAAGATCAGAAGACATGCAATTCGACAGATGCACTTGAATGTAAAGAAGAAACTTGTCTAAATGGAGGCTCGTGTATCGAGAGAACCAACACAATTCCCTTTTGCAGTTGCCCTTCCAACTACAAAGGAACCAGATGTGAAGTATTCGACCCAACCCTCCCGCCAATGACCATTTCTCCCATAACAAACCAAGACAAGTGTGAACCTTTGACCATACCTCTTTGCCAGGGTCTACACTACAATACCACAATATTTCCAAACATGTTGAAACATAGAACACAAGTAGAGGCTGCGATTGAGATCCACCAGTTTTTTCCTTTAGTGAAAGTGGCTTGCTCGGACGATTTGGCATTTTTCCTTTGTTCCGTGTACGCCCCGATGTGCACAGAGTTAAATACTCCAGTTCCGCCTTGCCGCTCTCTTTGTAACAGTGCTAGACACGGCTGTGAAGAACTGATGAATCGTTTCGGCTTCACATGGCCAGAGAGGTTACGGTGCGAAAACTTTCCAGAACTTGGTAAAGATATCTGCGTTGGAGGTGATACAACAACAGGACCCACTCACCAGCCGCCGACAACTAAGAATGTGTATCTATCATTTGACTGGCGGCCAAAGAACACAACAGCATATGTAAACGACCATCTCTGGCTTCACTGTAATGCGACAGGCGACCCCAAACCCAAGATATTTTGGAGCAAGGAGGAACAAGGCGGCGACAAGCTTGACGAAAAAAGGTTCATTCAGTACACCAATGGAACACTTCATATTAAAAGTGTGCGCATAGAGGACGAGGGACAGTACTACTGTATCGCCGCAAACCATGCCGAAATGAAACAAAGCAAGTTCAGTTTGAAAGTACAGAATGCATTTTTGTGTAAAGCAGAAACTTGTCTAAATGGAGGCTCGTGTATCGAGAGAACCAACACACTTCCCTTTTGCAGTTGTCCCTCCAATTACAAAGGAACCAGATGTGAAGTATTCGACCCAAGCCTTCCGCTAACGACAATTTCTCCCACAACGAAGCAAGGGAATTGTGAACCTTTGACCATACCTTTTTGCGTGGGTTTGCCCTACAATACCACAATATTTCCAAACATGTTGAATCATAGAACACAAGAAGAGGCTGCGCTTGAGCTCAACCAGTTTGCTCCTTTGGTGCGATTTGGTTGCTCGGACGATTTGGTGTTTTTCACTTGTTCCGTGTACGCTCCGATGTGCTCAGAGTTAAATACTCCAATTCCGCCTTGCCGCTCTCTTTGTAACAGTGTTAAACACGGCTGTGAACCGGTGTTGAACAGTTTCGGCATCCCATGGCCAGACAGTTTAAACTGCGATATATTTCCAGAACTTAGTGATCAAACCTGCGTTGGAGGTAATATAACAACAGGACCCACTCACCAGCCGCCGACAACTAAGAATGGTAAGTCTGCTACTAGCCCTGTAAAGACAAGGATCATTTTGTTTCATCTACATAAAGGATGTTTTCTTAGATAA

Transcript

OS493_021986-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF01392	Fz	Fz domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015526	Family	Frizzled/secreted frizzled-related protein	Interproscan
IPR020067	Domain	Frizzled domain	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036790	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309	FRIZZLED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0035567	Biological Process	non-canonical Wnt signaling pathway	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_021986-T1 global RNA-seq network