Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.
Genomic Location: scaffold_87:1371602...1385220
NR annotation: KAJ7378681.1, Low-density lipoprotein receptor- protein 6 [Desmophyllum pertusum]
| CDS | |
| OS493_021985-T1 | |
| Transcript |
| OS493_021985-T1 |
| Protein |
| OS493_021985-T1 |
| Uniprot term | Description |
|---|---|
| O88572 | Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1 |
| O75581 | Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2 |
| P35951 | Low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Ldlr PE=1 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00057 | Ldl_recept_a | Low-density lipoprotein receptor domain class A | Repeat | Interproscan |
| PF00058 | Ldl_recept_b | Low-density lipoprotein receptor repeat class B | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000033 | Repeat | LDLR class B repeat | Interproscan |
| IPR002172 | Repeat | Low-density lipoprotein (LDL) receptor class A repeat | Interproscan |
| IPR020067 | Domain | Frizzled domain | Interproscan |
| IPR036055 | Homologous_superfamily | LDL receptor-like superfamily | Interproscan |
| IPR023415 | Conserved_site | Low-density lipoprotein (LDL) receptor class A, conserved site | Interproscan |
| IPR036790 | Homologous_superfamily | Frizzled cysteine-rich domain superfamily | Interproscan |
| IPR051221 | Family | Low-density lipoprotein receptor-related | Interproscan |
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR011042 | Homologous_superfamily | Six-bladed beta-propeller, TolB-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22722 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005886 | Cellular Component | plasma membrane | Interproscan |
| GO:0006898 | Biological Process | receptor-mediated endocytosis | Interproscan |
| GO:0016324 | Cellular Component | apical plasma membrane | Interproscan |
| GO:0042562 | Molecular Function | hormone binding | Interproscan |
| GO:0043235 | Cellular Component | receptor complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K20053 | VLDLR; very low-density lipoprotein receptor | - | Membrane trafficking | ko04131 | deepkoala |
| Expression trend for OS493_021985-T1 global co-expression network |