Gene detail

Detailed information of OS493_021775-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_021775-T1	UBIQUITIN-ACTIVATING ENZYME E1	scaffold_85	1218239	1254679	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_021775-T1

ATGCAAGGAGTAATCGGAGGGATTACAGCTCAGGAAGTGATGAAGGCATGCAGTGGAAAGTTCCATCCCATCTATCAACTGCTGTACTTTGACAGTCTGGAATGCTTGCCAGAAGAAGGAGAAATTTCAGAAGCCTCGTGCCAACCTATTGGATCAAGATACGATGCACAACTTGCAGTCTTTGGAAGTGAATTCCAAAAGAAACTGTCAGAACAGAAGTACTTTATTGTTGGTGCTGGCGCCATTGGATGTGAACATCTTAAAAACTTTGCCATGATGGGATTAGGTTGCAGTGATGCAGGGCGCGTGTTTGTTACAGATATGGACACCATCGAGAAATCAAACCTTAACAGACAGTTCCTGTTCAGACCAGGAGATGTGCAGCAAATGAAATCAGACGTTGCTGCAAGGGCAGTGAAGGTCATGAATCCTGAGATTAATATTACAGCGCACCAGAACAGAGTTGGACCAGAAACAGAGAAAGTATACAATGATGACTTCTTTGAAGCTCTTAATGGTGTGACAAATGCCTTGGATAACATTGATGCCAGAATGTACATGGACAGGAGGTGTGTATATTATCACAAACCACTCTTGGAATCAGGAACGTTAGGAACCAAAGGAAATGTTCAGGTTGTGCTGCCTTTCCTGACAGAATCTTACAGCTCCTCACAGGACCCCCCAGAGAAATCAATTCCTATTTGTACACTAAAGAATTTCCCCAACGCTATTGAACACACTTTACAGTGGGCGAGAGATGCGTTTGAAGGACTCTTCACTATTCCCGTGGAGAATGTTAACCAGTTTATGGGTGACCCCAAGTATGTTGACAGAACAGACAAGCTTCCTGGGATGCAAGCCGCTGAAATTTTCGACAGCATCAAAAAATGTCTGTTTGACGAGCGGCCCCGTGAATTTGCTGACTGTGTGAGTTGGGCCAGAATACAGTTCCAAGAAAACTACCACAACACGATCTGTCAACTGCTCTTCAACTTCCCTCCCGACCAGCTAACTAGTTCAGGACAGCCGTTTTGGTCTGGTCCTAAGCGATGCCCTCATCCTCTGGACTTTGATCCTTGCGAGCAAACACACATGGACTATGTTGTTGCTGCTGCTAACTTGCGAGCGTACATGTTTGGAATCAAAGGATCAAGAGACCAAAAACTAATTCTTAATTGTTTGAAAACTGTCACGGTACCGAAGTTTCAACCCAGATCAGGCGTGAAAATTTCTGTTACCGACGAAGAGGCCGCTCAAGAAGGCTCTGGTGCTGTTGATGACGATGACCTAGAAAAGGTGAAAGGTGCTATTCTGGCAGCAAAAGAGAAACTGTCAGGCTTCAAGATGGCACCCGTTGAATTTGAAAAGGATGATGACACGAATTTTCACATGGACTTTATAGTGGCAACCTCCAACCTTAGAGCGGCTAACTACTCCATCCCACCAGCAGATAGGCACAAGAGTAAGTTGATTGCTGGCAAGATTATTCCCGCCATCGCCACTACAACCGCCTTAGTAAGTGGACTGGTCGCACTGGAGTTGTACAAGATTGTTCAAGGAAATGAAAAACTGGAGACCTATAAGAATGGGTTCATCAATCTTGCCTTGCCGTTCTTTGGCTTTTCTGAACCAATCACTGCACCGACAAACAAGTATTACGACAAAGAATTCACTCTGTGGGATCGGTTTGAAGTCAACGGTTTGTATGAAGATGGCCACGAGATGACCATGAAGGAACTCTTTGAATACTTCCAGAACACGCACAAGCTTGAAGTGACGATGCTTTCTCAAGGAGTTTGCATGCTGTACTCATTCTTTATGCCCGCTGCCAAGATGAAGGACAGATTAGCCTTAAAAGTATCCGAGGCTGTGGAAAAGGTTTCCAAGAAGAAAATTAAATCTTACGTCAAAGCTTTGGTGCTCGAGCTGTGCTGTAACGACACAGAGGGCGAAGATGTCGAGGTCCCGTATGTACGCTACCGTTTCCGGTTATCTTCATTCAAAAACTACTCCTTCTGTGCGTCACTGCCAAGAGCTTCAGCAGCTATTTTGAGCAACCAAGAAACAACGAAGACGTCGGGGAAGAAGATGAATCCTGGTGAAGAAAAGAAGAAAGTCCTGTCTAAGAAAGAAGAACTCCTGGCTAAGGCGGCAGAAATTGGCCAGCAGAGAGCGGATGAGATAGCGCAGCAGCAGAAAAGAGCAAAGAGAAATTGTGAAAAACGGAGTGTGTACAAATCCTAA

Transcript

OS493_021775-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E1\|ThiF\|ThiF

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00899	ThiF	ThiF family	Domain	Interproscan
PF09358	E1_UFD	Ubiquitin fold domain	Domain	Interproscan
PF10585	UBA_E1_SCCH	Ubiquitin-activating enzyme, SCCH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000594	Domain	THIF-type NAD/FAD binding fold	Interproscan
IPR018074	Conserved_site	Ubiquitin-activating enzyme E1, conserved site	Interproscan
IPR018075	Family	Ubiquitin-activating enzyme E1	Interproscan
IPR018965	Domain	Ubiquitin-activating enzyme E1, C-terminal	Interproscan
IPR019572	Domain	Ubiquitin-activating enzyme, SCCH domain	Interproscan
IPR033127	Active_site	Ubiquitin-activating enzyme E1, Cys active site	Interproscan
IPR035985	Homologous_superfamily	Ubiquitin-activating enzyme	Interproscan
IPR038252	Homologous_superfamily	Ubiquitin-activating enzyme E1, C-terminal domain superfamily	Interproscan
IPR042063	Homologous_superfamily	Ubiquitin-activating enzyme E1, SCCH domain	Interproscan
IPR045886	Family	ThiF/MoeB/HesA family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10953	UBIQUITIN-ACTIVATING ENZYME E1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004839	Molecular Function	ubiquitin activating enzyme activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0006974	Biological Process	DNA damage response	Interproscan
GO:0008641	Molecular Function	ubiquitin-like modifier activating enzyme activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0032446	Biological Process	protein modification by small protein conjugation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_021775-T1 global RNA-seq network