Detailed information of OS493_021280-T1 in Lophelia pertusa

Genomic Location: scaffold_81:323896...340420
NR annotation: KAJ7378698.1, hypothetical protein OS493_021280 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q2PZL6Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV=2
Q6V1P9Protocadherin-23 OS=Homo sapiens OX=9606 GN=DCHS2 PE=1 SV=2
Q9NZR2Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens OX=9606 GN=LRP1B PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14670FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan
PF00028CadherinCadherin domainDomainInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF12947EGF_3EGF domainDomainInterproscan
PF00008EGFEGF-like domainDomainInterproscan
PF00058Ldl_recept_bLow-density lipoprotein receptor repeat class BRepeatInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742DomainEGF-like domainInterproscan
IPR000033RepeatLDLR class B repeatInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR039808FamilyCadherinInterproscan
IPR000436DomainSushi/SCR/CCP domainInterproscan
IPR035976Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR024731DomainEGF domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR011042Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24027CADHERIN-23Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0000902Biological Processcell morphogenesisInterproscan
GO:0005912Cellular Componentadherens junctionInterproscan
GO:0007043Biological Processcell-cell junction assemblyInterproscan
GO:0007275Biological Processmulticellular organism developmentInterproscan
GO:0016339Biological Processcalcium-dependent cell-cell adhesion via plasma membrane cell adhesion moleculesInterproscan
GO:0016342Cellular Componentcatenin complexInterproscan
GO:0034332Biological Processadherens junction organizationInterproscan
GO:0044331Biological Processcell-cell adhesion mediated by cadherinInterproscan
GO:0045296Molecular Functioncadherin bindingInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0098742Biological Processcell-cell adhesion via plasma-membrane adhesion moleculesInterproscan

Expression pattern
 Expression trend for OS493_021280-T1 global co-expression network
TOP