Detailed information of OS493_021175-T1 in Lophelia pertusa

Genomic Location: scaffold_80:905301...926396
NR annotation: KAJ7384544.1, 3'-5' RNA helicase ythdc2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
B2RR833'-5' RNA helicase YTHDC2 OS=Mus musculus OX=10090 GN=Ythdc2 PE=1 SV=1
Q5R7463'-5' RNA helicase YTHDC2 OS=Pongo abelii OX=9601 GN=YTHDC2 PE=2 SV=2
Q9H6S03'-5' RNA helicase YTHDC2 OS=Homo sapiens OX=9606 GN=YTHDC2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04146YTHYT521-B-like domainDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF21010HA2_CHelicase associated domain (HA2), ratchet-likeDomainInterproscan
PF04408HA2_NHelicase associated domain (HA2), winged-helixDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF07717OB_NTP_bindOligonucleotide/oligosaccharide-binding (OB)-foldDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR007275DomainYTH domainInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR048333DomainHelicase associated domain (HA2), winged-helix domainInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR011709DomainDEAD-box helicase, OB foldInterproscan
IPR007502DomainHelicase-associated domainInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18934ATP-DEPENDENT RNA HELICASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005622Cellular Componentintracellular anatomical structureInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20099YTHDC2; ATP-dependent RNA helicase YTHDC2EC:5.6.2.6
Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_021175-T1 global co-expression network
TOP