Gene detail

Detailed information of OS493_021129-T1 in Lophelia pertusa

Genomic Location: scaffold_80:453560...465426
NR annotation: KAJ7384500.1, Ubiquitin carboxyl-terminal hydrolase 3 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q91W36	Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus OX=10090 GN=Usp3 PE=2 SV=1
Q9Y6I4	Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens OX=9606 GN=USP3 PE=1 SV=2
Q7ZUM8	Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio OX=7955 GN=usp44 PE=2 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP
Ubiquitin Family	UBD\|ZnF\|ZnF_UBP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02148	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR001607	Domain	Zinc finger, UBP-type	Interproscan
IPR050185	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11986	USP3; ubiquitin carboxyl-terminal hydrolase 3	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Expression pattern