Gene detail

Detailed information of OS493_020869-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_020869-T1	OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD	scaffold_78	895682	897796	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_020869-T1

ATGCTTCGTCGCATTGTGGTCGAGAATTATATTATATTTAAAGGTCGACAAGAATTGGACTTGGACAGCACATGTGGCGGTAGTTTTCATACACTTGTAGGGGAAAATGCAAGCGGCAAGAGCAGCTTTGTGGCATTGGTTAAAGCAGCGAGTAACTTTGTTGACAACGATGAGGATTTTGAGGTGATAGGTAATGACATAGCTAGTGCCAAAGCAGTTTGCGAGTTTCATTTTAAACATGGACATGAACTTTTGCAATATTTTGAAAGATCATCAACTCGAGCACTTCACCCGACCGTTCCTTGTGTTTCGGGATTGTTTTCATGGTTTTCGGATGATATCCTAAAATTTCCGATGCAACTTGCCGACCTATTGAGAGACACATTTGGTTCTGTTTCAGCTTTAGTACGTGTATTTTCTGGAAGAAAGAGCTTTAATAATAATCATCCTTCTCATTGCCAATTCCTTTACGTTGTCTCCGAGGACGTTGTGTTGGTGGTCATCAAAAACAATGGCGAACTCTCTGCAGCCCTCCACGACCCCTTACCCGCGGGTGTTGATCTCATAGAGTGGTGTCCTGACGAGGCTTTTCTTCATAAGGTGAAACTGGATAATCCGAACGAGTCTACCATGGACGCTATTGAGCAACCTTTATCATTAGAGTCTTCTTCTGACACGGATTTTATGCAAACCAAGCATGCACACTTTGTTAACAGCAACTGGGATACACTGAGGTATCGGGACGTGAAGAACTTAATTATGGTGAGCCTGCTCAAGAATTTGTCTCAAGAAGGTATTGACGACGCTCTTTGTTTGTTCCATGAGATAATGGGTGACCAGAGTCTTGCTTTTGAGCTGGATCTTGATGGCGACATCCCAATACGCATTTTGGACAAAGGAACTCGTAGAATCATTCAGCGTATTTCCGAAGGAACATTTTCTACCTTCGTTGTAGCCGCGTTAGTTGTCCAGCCATTCAGCCGTACCGTCATTTTCGACGAGGTTTGCAGAGGGATGCATCCATTACAAGTTCGTCGTTTGAGAACAATTCTCATGCGAGAGTCAAGAAACAGAACAAAGTGTATCATAACTACGACACACTCACCGGAAGTGGTAGAGGTTGAAAGAATCACCTTGATTTGGAGGTTCCAAGTCCTTCCATCCGGCTATTGCCAGATAAGGCGTGTTAGGTCACGTTACAACGTAAGAGATTTGCACTTCATTGGTGGAGCTGAAGTGAGGGAAATATTTTTTGCACGATACATTATTTGGGTCGAGGGTGAAAGTGACAAGAGATTTATTGAGGCGTTGTTGAGGTTATTTGATGAAGGAAACCTGGAGCTCTTTAAGGCCCTTTCACAACCTGGTGCAGCCACGAACACGAGCGGAGGTCCAGATGGTTCTTTGTCTGAGCATTCTTCAAGCCACGGCGCAGGTCGGTCTCTCCCTGTAGAAAACCTCTTGCAAGATCCAGCTTATGAAAGAAAGTACTACACCAGAGAAGTGTTGTCCACTATCCAAGAAGCCGTCCGCAGCTGTGTCGTACTGTCAATCAGCGGGAAGAAAAACGTTTACAAAGCTACAGCAATTTGTAATGATCTCGGCATTCCACATGCTGTGGTGTGTGACTTAGATGTTATTATCCCTAACTCAAAGGAGAATTCAGTTCAGTCTCAATTCGACAGCTGCCGAGGACTGTGGACTAGTGCGCCCATTCCTCACGCCAAGACGAAGCTTTTGAATGAAGACCAGTGCCCTGCATCAAAATGTGTTCAGGACTCCAATCCTGGCTTGATACCAAAGTTGCGCGCGTGTAGAACAGTGGGTGAAGTCATGAAGTTTTATGACGAAACGCAACATATATTTACATGGCGTGTAGATGGTGGTGAAATAGAAGACGCCATTAGATTGACCAAGTCACAGTTTGGAAAGAAATTGTGGCCGGATCTATCTTTTGGTGATATTAAGGAGCTCGTTGTTTGTTTATTGCAGCCACCCAAGTTACGAGAACGGAATCCAAGGGACAAGGACGCAAGCAAGCAGCCAAACCCAGAGCTTCTAAGATGTATCTTCTTCCTCATCCATTTCTTTACAGAACGCTTAACAGCCAATTAA

Transcript

OS493_020869-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13304	AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050388	Family	ABC Transporter, Nickel and Peptide Import	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43297	OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_020869-T1 global RNA-seq network