Detailed information of OS493_020560-T1 in Lophelia pertusa

Genomic Location: scaffold_76:667644...678022
NR annotation: KAJ7372135.1, DNA repair and recombination protein rad54b [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9DG67DNA repair and recombination protein RAD54B OS=Gallus gallus OX=9031 GN=RAD54B PE=2 SV=1
Q9Y620DNA repair and recombination protein RAD54B OS=Homo sapiens OX=9606 GN=RAD54B PE=1 SV=1
Q6PFE3DNA repair and recombination protein RAD54B OS=Mus musculus OX=10090 GN=Rad54b PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR050496FamilySNF2/RAD54 Helicase and DNA RepairInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45629SNF2/RAD54 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000724Biological Processdouble-strand break repair via homologous recombinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007131Biological Processreciprocal meiotic recombinationInterproscan
GO:0015616Molecular FunctionDNA translocase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10877RAD54B; DNA repair and recombination protein RAD54BEC:5.6.2.-
DNA repair and recombination proteinsko03400deepkoala

Expression pattern
 Expression trend for OS493_020560-T1 global co-expression network
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