Gene detail

Detailed information of OS493_020347-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_020347-T1	SUPERNUMERARY LIMBS, ISOFORM B-RELATED	scaffold_74	1457774	1466825	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_020347-T1

ATGAGCTTGATTTTTGCTCGGTTGCTAAGGAAACACCGCAGAAAAGTTTCAGAAAAGTACAATTCCGCCAAAATGGCGGACGCCGGCAGCAATGAGTTGACTTTTCTGCCGGTCGTAAAAGCCAACACTTCGAAACAAGGAAAGAAAAATAAGCGAGTTGGATTCAAAAATCTCCAGAGGCCGTTGTTACTCCCAAGCTTGGAGCTTAGCACTGTTGATGTGCAATTAGTCAGCAGTTTGTTCTCGCACAAACAAATCTGCAAGAAGGTTTGCGAATGGTTTACCGGTTGGCGATCATGGCAACAACGTATTTTATTATGCGGTGTATCTGACAAATGTACGAAGGGACAGCTACAGGCATTAGTGACGACGCTTGAACCAGTGTTTCATAGGGATTTTGCGACTAGGCTCAAAGGAATTTACCCAACAACTCTGATACATACTCGACAAATTCGTACTGCCCCGGCTCCGAGCTTTAGCAAGGAAGAGTTAATAATCGCTCTTCAGCCATCGCAGGAAATAGATCGAATTAATTCTTCAGTTACGGGTGCTGACATCGAAAAGCTCAAAGACGGGGATTCAGACAGTTTTCAAAGTGAATCGGGCGGGTTACAGATGAGTTTTAGTGATACAAATGTAACTGCAGACACAGGGACTGTCGGGGAGGCGGAGCGCCCCCTTATCCCCGAGGGGGACCGCGGTACAGTAATGACAGCATCAGCCCATACCATACAACCAGCTACAGACGTGGAGGAAAATCGTCGGCATGAGCATGCTCCACCGTTTTTAAGGAGAGTGAGCACGCCGCATTTTTTCCCGCACTTTAATCATCAGCAGCTGGGGTATATGAAAACTGCCTTGAGGACAGGGGATACCGATAAGCTGTATGGACATGCGCCTGTCACATTTAAACACGACAAGTGGTGGGAAGGTCACAAGGGAGCCCGGCTGGTCAAGCCGCACAAGAGTAAACTGTCAAATCATTTTAAATCACAAATCAATCAGGTCCATCAGTGGCTGGATGATTGGCAGACGCACGAGAGAGTGGAGTTGCTGTCGGAGGTGGTGAAGTGTTGTGATGATGAATGTCTTAATTTCTTTGCTCAGTGTTTGACTCAAAGGCTCAGAGATCAAACAGATTTAAACTGTGTTCCAGACCATGTTCTGCTCAACATATTTTCATACCTAAATGTCCGAAGTTTGTGCCAAAGTTCTCAGGTTTGTTATCGGTGGAGATTTTTAACCAAAGACAGTAGACTGTGGAAGGATAAAATTGCTGCTATGGGTGCCACTGAGGGAATCGTGGACTTGACTCAAAAAATTGAAGTCCTTGGTCAAGGCCAGGCTGTTGACTGGAAACAAGCGTACAGAGAAGTACGTATGTACTACAAACAAATGGCCGCAGTGAAACTCGAGGAGCAACAAGAGAAGGATTTGAAAAATAAATTAGCAGAAGCGAGACGGGAAGAGAAGAAGAAGACAAGAGTAACAGAATTGCCGCCCAAGCCCAGAGACGGTAATGATGGAAAGACTGTGCCAAGTGGTGTTGTTGAAATAATGTTAACTCAATCCATGGAAAACATTGGTCCTGCACAGTCTGCACCGGCCGCTGACCAAAAGGAGCACGCTGACGAGTTTACATCGTCCGACTTTGATGGAAATGATTTAACAGGCGGGAACTTAAAGATGCTGGCTCGCAGTCTCAAGGCTCTGGCTCGAGATGAAGATAAACCTGAAGATTTAGATGTAGCTCTAGATGTGCGGCCCACTCTAGTGCAGGCCTCTAATCTTTTGGAAGGTGATGGAGAAGCAGGTAGACACAAGTTTCGTTACTTGTCACTTGCTGTCCAAGGTGTTTTTGCCGTCCGAAGAGTGCGGAGGTTACAGGGACACATGGATGCGATTCTTTGCTTACAGTTTGATAAGAGAAGGATTATTACAGGCTCCGCTGACCGCACAGTACGTTTGTGGGATGTAAGAAGTGGGCGAAGCATTCACAAGCTCAAAGGACACAAGGGTGGAGTGCGGTGTCTGCAGTTTGACGACGAAAAAATCACCAGCGGCTCCTGGGACATGACTGTCATGGTTTGGGATATCGTTAAGTTTCACAGACTAAAGGTGCTTTATGGTCACACTGGATGCGTGTCTTGTTTGCAGTTTAGTGGGAATACGTTAGTCACTGGGTCACATGACCGTACTATTCGCATCTGGAGTACAGTCACGTGGGAGTGTGAAGGGGTCATTGAAGGGCATGAAGGTGCAGTCACAGGCCTACAGTTAAGCGGACAGTATATTGTTAGCGGTTCTGTTGATAGGACTTTAAAATTGTGGAGTCTAGAGACGAGAGAGTGTCTTCAGACATTTGTTGGACATAGAGATGCTGTACTCGCCGTAAAGGTGCTTGGTAACCTGGTATTTAGTGGTTCCGCGGATGGTATGATCATGTTCTGGAACCTGGAAACTGGAAAATGCGAGGTTGCTATTCAGGGTCACGAGGGCCCAGTCCACTCTCTTGATTACAACGATTATCAACATTTCTTCTCGTCCGGAGGGGACCATTTATTAAAGGAATGGGACATTAGCACGTGTACGTGTCTAAGGTCCTTACAGGGACACAAAGGACCGGTGTTCTGTGTTAAGGCCGTCCCACACAGGGTCGTGTCATGTTCTGCCGATGGATTCACGAGGATCTGGGACCTAGATTTCCCAGAAGGAAAGGGTCAAAGTAAGAGCATTGCTGTCGAGGACAACGTCATCGCACCACACACAATTCAACAAAATTCTCTTAAAAAATTATTTGATCGACGCACGATTATGTATAAATTTCGACGAGCGCGCCATGATATGCTTGTTAAGTGTATCAAAAATCAGGACAAAAGATGTTCCTAA

Transcript

OS493_020347-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR053299	Family	ASTRA complex-associated WD repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44156	SUPERNUMERARY LIMBS, ISOFORM B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:1990756	Molecular Function	ubiquitin-like ligase-substrate adaptor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_020347-T1 global RNA-seq network