| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| OS493_019900-T1 | TRANSDUCIN BETA-LIKE 3 | scaffold_71 | 918345 | 930388 | + |
| CDS | |||||
| OS493_019900-T1 | |||||
| Transcript |
| OS493_019900-T1 |
| Protein |
| OS493_019900-T1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00327 | Ribosomal_L30 | Ribosomal protein L30p/L7e | Domain | Interproscan |
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF08079 | Ribosomal_L30_N | Ribosomal L30 N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR012988 | Domain | Large ribosomal subunit protein uL30, N-terminal, eukaryotes | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR016082 | Domain | Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain | Interproscan |
| IPR018038 | Conserved_site | Large ribosomal subunit protein uL30, conserved site | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR020472 | Repeat | G-protein beta WD-40 repeat | Interproscan |
| IPR035808 | Domain | Large ribosomal subunit protein uL30, eukaryotic/archaeal | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR036919 | Homologous_superfamily | Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19854 | TRANSDUCIN BETA-LIKE 3 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000472 | Biological Process | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0000480 | Biological Process | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0005730 | Cellular Component | nucleolus | Interproscan |
| GO:0030686 | Cellular Component | 90S preribosome | Interproscan |
| GO:0034511 | Molecular Function | U3 snoRNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for OS493_019900-T1 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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