Detailed information of OS493_019733-T1 in Lophelia pertusa

Genomic Location: scaffold_70:573542...576222
NR annotation: KAJ7372289.1, hypothetical protein OS493_019733 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q90416Retinoic acid receptor RXR-gamma-A OS=Danio rerio OX=7955 GN=rxrga PE=2 SV=2
P28701Retinoic acid receptor RXR-gamma OS=Gallus gallus OX=9031 GN=RXRG PE=2 SV=1
P48443Retinoic acid receptor RXR-gamma OS=Homo sapiens OX=9606 GN=RXRG PE=1 SV=1
 Gene family
Gene familySubfamily
Transcription Factors FamilyESR-like
Transcription Factors FamilyMiscellaneous
Transcription Factors FamilyRXR-like
Transcription Factors FamilySF-like
Transcription Factors FamilyTHR-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00104Hormone_recepLigand-binding domain of nuclear hormone receptorDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001723FamilyNuclear hormone receptorInterproscan
IPR035500Homologous_superfamilyNuclear hormone receptor-like domain superfamilyInterproscan
IPR000003FamilyRetinoid X receptor/HNF4Interproscan
IPR016355FamilyNuclear hormone receptor family 5-likeInterproscan
IPR000536DomainNuclear hormone receptor, ligand-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24086NUCLEAR RECEPTOR SUBFAMILY 5 GROUP AInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003707Molecular Functionnuclear steroid receptor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0004879Molecular Functionnuclear receptor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0009755Biological Processhormone-mediated signaling pathwayInterproscan
GO:0009888Biological Processtissue developmentInterproscan
GO:0090575Cellular ComponentRNA polymerase II transcription regulator complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K08524RXRA, NR2B1; retinoid X receptor alpha-Nuclear receptorsko03310deepkoala

Expression pattern
 Expression trend for OS493_019733-T1 global co-expression network
TOP