Detailed information of OS493_019627-T1 in Lophelia pertusa

Genomic Location: scaffold_69:1282965...1300343
NR annotation: KAJ7378931.1, Nucleoporin-like protein 2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZI22Nucleoporin NUP42 OS=Gallus gallus OX=9031 GN=NUP42 PE=2 SV=1
O15504Nucleoporin NUP42 OS=Homo sapiens OX=9606 GN=NUP42 PE=1 SV=1
Q5RB98Nucleoporin NUP42 OS=Pongo abelii OX=9601 GN=NUP42 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13634Nucleoporin_FGNucleoporin FG repeat regionFamilyInterproscan
PF18044zf-CCCH_4CCCH-type zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR051767FamilyNucleoporin NUP42 domain-containing proteinInterproscan
IPR025574RepeatNucleoporin FG repeatInterproscan
IPR041367DomainE3 ligase, CCCH-type zinc fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46527NUCLEOPORIN-LIKE PROTEIN 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14321NUPL2, NUP42, CG1; nucleoporin-like protein 2-Messenger RNA biogenesisko03019deepkoala

Expression pattern
 Expression trend for OS493_019627-T1 global co-expression network
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